compartmap
Bioc removedHigher-order chromatin domain inference in single cells from scRNA-seq and scATAC-seq
Release Lineage
Entered 3.8 · Oct 31, 2018
Removed after 3.19 · May 1, 2024
Description
Compartmap performs direct inference of higher-order chromatin from scRNA-seq and scATAC-seq. This package implements a James-Stein estimator for computing single-cell level higher-order chromatin domains. Further, we utilize random matrix theory as a method to de-noise correlation matrices to achieve a similar "plaid-like" patterning as observed in Hi-C and scHi-C data.
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People
- Benjamin Johnson author maintainer
- Jean-Philippe Fortin author
- Kasper Hansen author
- Hui Shen author
- Tim Triche author
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