MAST
Bioc currentModel-based Analysis of Single Cell Transcriptomics
Release Lineage
Entered 3.4 · Oct 18, 2016
Current · Requires R 4.6
Description
Methods and models for handling zero-inflated single cell assay data.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
152 44 exported
Complexity
4.6 avg / 67 max
Call network
152 nodes / 104 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
12,385
Files
289
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
50
Internal functions
108
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.22
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
10.5%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5
System requirements
–
C++ standard
–
License
GPL(>= 2)
License flags
not SPDX, not OSI
History
Versions
20
First release
2016-11-22
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
5
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 75includes a package overview page
- Examples that run
- 100%42 run in a plain check
- Exported functions with examples
- 91%
- Documented parameters
- 99%
- Return-value docs
- 97%
- Help pages citing references
- 1%
Repository practices
4 development-tooling and community-health practices detected across 3 families in the upstream repository
Checks run against github.com/rglab/mast on 2026-10-18.
GitHub Pages site last deployed 2025-10-17
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| maits | list | 3 elements | No other package |
| predicted_sig | data.table | 100 × 8 | No other package |
| vbeta | data.frame | 34,200 × 11 | No other package |
| vbetaFA | – | – | – |
Topics
Depended on by (5)
Bioconductor (4)
CRAN (1)
Suggested by (6)
People
- Andrew McDavid author maintainer
- Greg Finak author
- Masanao Yajima author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("MAST")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.