iSEE
Bioc currentInteractive SummarizedExperiment Explorer
Release Lineage
Entered 3.7 · May 1, 2018
Current · Requires R 4.6
Description
Create an interactive Shiny-based graphical user interface for exploring data stored in SummarizedExperiment objects, including row- and column-level metadata. The interface supports transmission of selections between plots and tables, code tracking, interactive tours, interactive or programmatic initialization, preservation of app state, and extensibility to new panel types via S4 classes. Special attention is given to single-cell data in a SingleCellExperiment object with visualization of dimensionality reduction results.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
264 86 exported
Complexity
3.5 avg / 31 max
Call network
264 nodes / 356 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
35,781
Files
252
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
143
Internal functions
178
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.34
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
16.7%
Unsafe pattern score
15
Dep constraint coverage
3.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
17
First release
2018-05-02
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
12
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 73includes a package overview page
- Examples that run
- 100%35 run in a plain check
- Exported functions with examples
- 54%
- Documented parameters
- 99%
- Return-value docs
- 68%
- Help pages citing references
- 1%
Repository practices
9 development-tooling and community-health practices detected across 5 families in the upstream repository
Checks run against github.com/isee/isee on 2026-10-11.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
GitHub Pages site last deployed 2026-07-13 · The repository has a site deploy workflow
pkgdown site last built 2026-07-13
Show all practicesHide 1 practice
Topics
Depended on by (11)
Show all 17 packagesHide all 17 packages
Bioconductor (11)
Suggested by (6)
People
- Kevin Rue-Albrecht author maintainer
- Aaron Lun author
- Federico Marini author
- Charlotte Soneson author
Cite
Cite this package
Run in R for the authors' entry:
citation("iSEE")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.12688/f1000research.14966.1.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.