iSEE
Bioc currentInteractive SummarizedExperiment Explorer
Release Lineage
Entered 3.7 · May 1, 2018
Current · Requires R 4.6
Description
Create an interactive Shiny-based graphical user interface for exploring data stored in SummarizedExperiment objects, including row- and column-level metadata. The interface supports transmission of selections between plots and tables, code tracking, interactive tours, interactive or programmatic initialization, preservation of app state, and extensibility to new panel types via S4 classes. Special attention is given to single-cell data in a SingleCellExperiment object with visualization of dimensionality reduction results.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
264 86 exported
Complexity
3.5 avg / 31 max
Call network
264 nodes / 356 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
35,784
Files
265
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
143
Internal functions
178
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.34
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
16.7%
Unsafe pattern score
15
Dep constraint coverage
3.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
17
First release
2018-05-02
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
12
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 99%
- Return-value docs
- 68%
- References docs
- 1%
Topics
Depended on by (17)
People
- Kevin Rue-Albrecht author maintainer
- Aaron Lun author
- Federico Marini author
- Charlotte Soneson author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("iSEE")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.