rliger
Linked Inference of Genomic Experimental Relationships
Description
Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>, and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for more details.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 7, 2026
CRAN incoming feasibility
Maintainer: ‘Yichen Wang <wayichen@umich.edu>’ Reading Rd files failed with message: cannot open the connection
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 10, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 3, 2026
package dependencies
Packages required but not available: 'DelayedArray', 'HDF5Array' Packages suggested but not available for checking: 'DESeq2', 'SingleCellExperiment', 'SummarizedExperiment' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
package dependencies
Package suggested but not available for checking: ‘reactome.db’
installed package size
installed size is 11.0Mb
sub-directories of 1Mb or more:
R 2.0Mb
libs 6.8Mb
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/rliger.Rcheck/00install.out' for details.
package dependencies
Package suggested but not available for checking: ‘reactome.db’
installed package size
installed size is 11.0Mb
sub-directories of 1Mb or more:
R 2.0Mb
libs 6.8Mb
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 10, 2026
package dependencies
Package suggested but not available for checking: ‘reactome.db’
installed package size
installed size is 11.0Mb
sub-directories of 1Mb or more:
R 2.0Mb
libs 6.8Mb
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 9, 2026
package dependencies
Packages required but not available: 'leidenAlg', 'RcppPlanc', 'uwot' Package suggested but not available for checking: ‘Seurat’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
package dependencies
Package suggested but not available for checking: ‘reactome.db’
installed package size
installed size is 11.0Mb
sub-directories of 1Mb or more:
R 2.0Mb
libs 6.8Mb
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 16, 2026
compiled code
File ‘rliger/libs/rliger.so’: Found non-API call to R: ‘ATTRIB’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
package dependencies
Package suggested but not available for checking: ‘reactome.db’
installed package size
installed size is 11.0Mb
sub-directories of 1Mb or more:
R 2.0Mb
libs 6.8Mb
ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 12, 2026
package dependencies
Package required but not available: ‘HDF5Array’ Package suggested but not available for checking: ‘EnhancedVolcano’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
compiled code
File ‘rliger/libs/rliger.so’: Found non-API call to R: ‘ATTRIB’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
package dependencies
Package suggested but not available for checking: ‘reactome.db’
installed package size
installed size is 11.0Mb
sub-directories of 1Mb or more:
R 2.0Mb
libs 6.8Mb
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
compiled code
File ‘rliger/libs/rliger.so’: Found non-API call to R: ‘ATTRIB’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
package dependencies
Package suggested but not available for checking: ‘reactome.db’
installed package size
installed size is 11.0Mb
sub-directories of 1Mb or more:
R 2.0Mb
libs 6.8Mb