cellNexus
Bioc removedQueries the Human Cell Atlas
Release Lineage
Release history unavailable.
Description
Provides access to a copy of the Human Cell Atlas, but with harmonised metadata. This allows for uniform querying across numerous datasets within the Atlas using common fields such as cell type, tissue type, and patient ethnicity. Usage involves first querying the metadata table for cells of interest, and then downloading the corresponding cells into one of several supported formats, including SingleCellExperiment, Seurat, or pseudobulk SummarizedExperiment objects. Note: The Human Cell Atlas data accessed through this package is subject to its own licensing terms (typically Creative Commons Attribution or similar open data licenses as specified by the Human Cell Atlas Data Use Agreement), which differ from the package license (GPL-3). See the package documentation for details.
None published for Bioconductor
Call graph
Open call graph →Code intelligence has not been computed for this package yet.
Code
Code metrics have not been computed for this package yet.
Topics
Available on
People
- Mengyuan Shen author maintainer reviewer
- NHMRC 1116955 funder
- NIH NHGRI 5U24HG004059-18 funder
- Jared Andrews author reviewer contributor
- Silicon Valley Foundation CZF2019-002443 funder
- Victoria Cancer Agency ECRF21036 funder
- Juan Henao author contributor
- Julie Iskander reviewer
- Stefano Mangiola author reviewer contributor
- Michael Milton author reviewer contributor
- Edward Yang author contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("cellNexus")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.