spatialHeatmap
Bioc currentspatialHeatmap: Visualizing Spatial Assays in Anatomical Images and Large-Scale Data Extensions
Release Lineage
Entered 3.12 · Oct 28, 2020
Current · Requires R 4.6
Description
The spatialHeatmap package offers the primary functionality for visualizing cell-, tissue- and organ-specific assay data in spatial anatomical images. Additionally, it provides extended functionalities for large-scale data mining routines and co-visualizing bulk and single-cell data. A description of the project is available here: https://spatialheatmap.org.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
151 52 exported
Complexity
10.1 avg / 84 max
Call network
151 nodes / 205 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
21,297
Files
291
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
80
Internal functions
99
Testing & CI
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
3.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
12
First release
2020-10-27
Latest release
2026-05-12
Avg cadence
182 days
Cold removal rate
100%
Dep drift
45
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 98%
- Documented parameters
- 78%
- Return-value docs
- 100%
- References docs
- 88%
Topics
People
- Jianhai Zhang author trl maintainer
- Julia Bailey-Serres author
- Alexander Borowsky author
- Thomas Girke author
- Brendan Gongol author
- Jordan Hayes author
- Le Zhang author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("spatialHeatmap")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.