clusterExperiment
Bioc currentCompare Clusterings for Single-Cell Sequencing
Release Lineage
Entered 3.4 · Oct 18, 2016
Current · Requires R 4.6
Description
Provides functionality for running and comparing many different clusterings of single-cell sequencing data or other large mRNA Expression data sets.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
146 13 exported
Complexity
7.9 avg / 114 max
Call network
146 nodes / 102 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
33,303
Files
172
Compiled share
1%
Has compiled src
Yes
Language breakdown
API
Exported functions
22
Internal functions
124
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.40
testthat edition
–
CI present
Yes
CI type
["travis","appveyor"]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
13.8%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6.0
System requirements
–
C++ standard
C++11
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
20
First release
2016-10-17
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
22
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 74%
- Documented parameters
- 93%
- Return-value docs
- 88%
- References docs
- 11%
Topics
Depended on by (5)
Bioconductor (5)
People
- Elizabeth Purdom author maintainer cph
- Davide Risso author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("clusterExperiment")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.