Rhtslib
Bioc currentHTSlib high-throughput sequencing library as an R package
Release Lineage
Entered 3.1 · Apr 17, 2015
Current · Requires R 4.6
Description
This package provides version 1.18 of the 'HTSlib' C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package="Rhtslib", "Rhtslib").
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
2264 1 exported
Complexity
3.3 avg / 8 max
Call network
2264 nodes / 4831 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
117,132
Files
772
Compiled share
99.8%
Has compiled src
Yes
Language breakdown
API
Exported functions
1
Internal functions
2
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
2
C++ standard
–
License
LGPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
23
First release
2015-04-16
Latest release
2026-04-28
Avg cadence
186 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 50%
Topics
Depended on by (7)
CRAN (1)
People
- Hervé Pagès author maintainer
- Nathaniel Hayden led author
- Tomas Kalibera contributor
- Martin Morgan author
- Jeroen Ooms contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("Rhtslib")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.