multicrispr
Bioc currentMulti-locus multi-purpose Crispr/Cas design
Release Lineage
Entered 3.12 · Oct 28, 2020
Current · Requires R 4.6
Description
This package is for designing Crispr/Cas9 and Prime Editing experiments. It contains functions to (1) define and transform genomic targets, (2) find spacers (4) count offtarget (mis)matches, and (5) compute Doench2016/2014 targeting efficiency. Care has been taken for multicrispr to scale well towards large target sets, enabling the design of large Crispr/Cas9 libraries.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
163 29 exported
Complexity
2.4 avg / 10 max
Call network
163 nodes / 364 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,492
Files
276
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
29
Internal functions
56
Testing & CI
Has tests
Yes
Test-to-code ratio
0.02
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
12
First release
2020-10-27
Latest release
2026-04-28
Avg cadence
197 days
Cold removal rate
–
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 97%
- Return-value docs
- 100%
- References docs
- 4%
Topics
People
- Aditya Bhagwat author maintainer
- Mette Bentsen contributor
- Johannes Graumann sad
- Michael Lawrence contributor
- Mario Looso sad rth
- Hervé Pagès contributor
- Jens Preussner contributor
- Rene Wiegandt contributor
- Richie ´Cotton author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("multicrispr")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.