escape
Bioc currentEasy single cell analysis platform for enrichment
Release Lineage
Entered 3.12 · Oct 28, 2020
Current · Requires R 4.6
Description
A bridging R package to facilitate gene set enrichment analysis (GSEA) in the context of single-cell RNA sequencing. Using raw count information, Seurat objects, or SingleCellExperiment format, users can perform and visualize ssGSEA, GSVA, AUCell, and UCell-based enrichment calculations across individual cells. Alternatively, escape supports use of rank-based GSEA, such as the use of differential gene expression via fgsea.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
49 15 exported
Complexity
5.8 avg / 19 max
Call network
49 nodes / 98 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
6,059
Files
72
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
15
Internal functions
30
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.49
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
11.1%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
12
First release
2021-04-22
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
37
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 87%
- Documented parameters
- 99%
- Return-value docs
- 100%
- References docs
- 6%
Topics
Depended on by (2)
Bioconductor (2)
People
- Nick Borcherding author maintainer
- Jared Andrews author
- Tobias Hoch contributor
- Alexei Martsinkovskiy contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("escape")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.