escape

Description

A bridging R package to facilitate gene set enrichment analysis (GSEA) in the context of single-cell RNA sequencing. Using raw count information, Seurat objects, or SingleCellExperiment format, users can perform and visualize ssGSEA, GSVA, AUCell, and UCell-based enrichment calculations across individual cells. Alternatively, escape supports use of rank-based GSEA, such as the use of differential gene expression via fgsea.

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Code

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Topics

Depended on by (2)

People

• Nick Borcherding author maintainer
• Jared Andrews author
• Tobias Hoch contributor
• Alexei Martsinkovskiy contributor