DOtools
Bioc currentConvenient functions to streamline your single cell data analysis workflow
Release Lineage
Entered 3.22 · Oct 30, 2025
Current · Requires R 4.6
Description
This package provides functions for creating various visualizations, convenient wrappers, and quality-of-life utilities for single cell experiment objects. It offers a streamlined approach to visualize results and integrates different tools for easy use.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
39 24 exported
Complexity
16.1 avg / 102 max
Call network
39 nodes / 50 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
17,303
Files
119
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
24
Internal functions
14
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.34
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
90.5%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
2
First release
2026-02-16
Latest release
2026-04-28
Avg cadence
71 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 34 (9 internal)
- Examples that run
- 83%20 run in a plain check · 4 never run
- Exported functions with examples
- 100%
- Documented parameters
- 98%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
5 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/marianoruzjurado/dotools on 2026-10-21.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
GitHub Pages site last deployed 2026-08-26 · The repository has a site deploy workflow
pkgdown site last built 2026-08-26
Datasets
Topics
People
- Mariano Ruz Jurado author maintainer
- David John author
- David Rodriguez Morales author
- DFG SFB 1366, Project B04 funder
- DFG SFB 1531, Project 456687919 funder
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("DOtools")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.