CiteFuse
Bioc currentCiteFuse: multi-modal analysis of CITE-seq data
Release Lineage
Entered 3.11 · Apr 28, 2020
Current · Requires R 4.6
Description
CiteFuse pacakage implements a suite of methods and tools for CITE-seq data from pre-processing to integrative analytics, including doublet detection, network-based modality integration, cell type clustering, differential RNA and protein expression analysis, ADT evaluation, ligand-receptor interaction analysis, and interactive web-based visualisation of the analyses.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
118 24 exported
Complexity
4 avg / 17 max
Call network
118 nodes / 76 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
7,213
Files
61
Compiled share
11.3%
Has compiled src
Yes
Language breakdown
API
Exported functions
24
Internal functions
50
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
Yes
CI type
["travis"]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
13.8%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
13
First release
2020-04-27
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
4
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 96%
- Documented parameters
- 97%
- Return-value docs
- 100%
- References docs
- 17%
Topics
Depended on by (1)
Bioconductor (1)
People
- Yingxin Lin author maintainer
- Hani Kim author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("CiteFuse")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.