metapod
Bioc currentMeta-Analyses on P-Values of Differential Analyses
Release Lineage
Entered 3.13 · May 20, 2021
Current · Requires R 4.6
Description
Implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. Functions can combine p-values across different tests in the same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq) or for corresponding tests across separate analyses (e.g., replicated comparisons, effect of different treatment conditions). Support is provided for handling log-transformed input p-values, missing values and weighting where appropriate.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
101 22 exported
Complexity
1.4 avg / 8 max
Call network
101 nodes / 113 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,147
Files
79
Compiled share
22.4%
Has compiled src
Yes
Language breakdown
API
Exported functions
22
Internal functions
28
Testing
Has tests
Yes
Test-to-code ratio
0.57
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
1 externalC++11
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
11
First release
2021-05-19
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 23includes a package overview page
- Examples that run
- 100%22 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 61%
Repository practices
1 development-tooling and community-health practice detected across 1 family in the upstream repository
Checks run against github.com/ltla/metapod on 2026-10-21.
The repository owner accepts GitHub Sponsors
Topics
Depended on by (7)
Bioconductor (6)
CRAN (1)
Suggested by (1)
People
- Aaron Lun author maintainer
Cite
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Run in R for the authors' preferred citation:
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Cite the R Observatory
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