anglemania
Bioc currentFeature Extraction for scRNA-seq Dataset Integration
Release Lineage
Entered 3.22 · Oct 30, 2025
Current · Requires R 4.6
Description
anglemania extracts genes from multi-batch scRNA-seq experiments for downstream dataset integration. It shows improvement over the conventional usage of highly-variable genes for many integration tasks. We leverage gene-gene correlations that are stable across batches to identify biologically informative genes which are less affected by batch effects. Currently, its main use is for single-cell RNA-seq dataset integration, but it can be applied for other multi-batch downstream analyses such as NMF.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
33 23 exported
Complexity
2.3 avg / 8 max
Call network
33 nodes / 32 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,091
Files
32
Compiled share
4%
Has compiled src
Yes
Language breakdown
API
Exported functions
23
Internal functions
5
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.36
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
GPL (>= 3)
License flags
SPDX valid, OSI approved
History
Versions
2
First release
2025-10-29
Latest release
2026-04-28
Avg cadence
181 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 9 (4 internal)
- Examples that run
- 100%9 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 93%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- anglemania tutorial HTML
Repository practices
5 development-tooling and community-health practices detected across 3 families in the upstream repository
Checks run against github.com/bimsbbioinfo/anglemania on 2026-10-22.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
GitHub Pages site last deployed 2025-10-23 · The repository has a site deploy workflow
Topics
People
- Aaron Kollotzek author maintainer
-
SFB1588
funder
Funded by the DFG – Deutsche Forschungsgemeinschaft
- Altuna Akalin author
- Artem Baranovskii author
- Vedran Franke author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("anglemania")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.