anglemania
Bioc currentFeature Extraction for scRNA-seq Dataset Integration
Release Lineage
Entered 3.22 · Oct 30, 2025
Current · Requires R 4.6
Description
anglemania extracts genes from multi-batch scRNA-seq experiments for downstream dataset integration. It shows improvement over the conventional usage of highly-variable genes for many integration tasks. We leverage gene-gene correlations that are stable across batches to identify biologically informative genes which are less affected by batch effects. Currently, its main use is for single-cell RNA-seq dataset integration, but it can be applied for other multi-batch downstream analyses such as NMF.
Code
Structure
Lines of code
4,093
Files
40
Compiled share
4%
Has compiled src
Yes
Language breakdown
API
Exported functions
23
Internal functions
5
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.36
testthat edition
3
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Return-value doc rate
100%
\dontrun example ratio
0%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
Yes
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
GPL (>= 3)
License flags
SPDX valid, OSI approved
History
Versions
2
First release
2025-10-29
Latest release
2026-04-28
Avg cadence
181 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Topics
People
- Aaron Kollotzek author maintainer
- SFB1588 fnd
- Altuna Akalin author
- Artem Baranovskii author
- Vedran Franke author