BiocHail
Bioc currentbasilisk and hail
Release Lineage
Entered 3.17 · Apr 26, 2023
Current · Requires R 4.6
Description
Use hail via basilisk when appropriate, or via reticulate. This package can be used in terra.bio to interact with UK Biobank resources processed by hail.is.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
21 15 exported
Complexity
1.8 avg / 4 max
Call network
21 nodes / 7 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,513
Files
74
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
15
Internal functions
6
Testing
Has tests
Yes
Test-to-code ratio
0.57
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
33.3%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.3.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
7
First release
2023-08-22
Latest release
2026-04-28
Avg cadence
185 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 26
- Examples that run
- 100%24 run in a plain check (1 of them under a condition)
- Exported functions with examples
- 100%
- Documented parameters
- 94%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
1 development-tooling and community-health practice detected across 1 family in the upstream repository
Checks run against github.com/vjcitn/biochail on 2026-10-21.
GitHub Pages site last deployed 2024-10-30
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| 1kg_annotations | data.frame | 3,500 × 6 | No other package |
| kg_3202 | data.frame | 3,202 × 22 | No other package |
| pcs_191k | data.frame | 3,202 × 5 | No other package |
| pcs_38k | data.frame | 3,202 × 8 | No other package |
Topics
People
- Vincent Carey author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("BiocHail")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.