OpEnHiMR

0.1.1

Optimization Based Ensemble Model for Prediction of Histone Modifications in Rice

0packages depend

6.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Dipro SinhaFirst published 2024-05-262 releasesCRAN page ↗

The comprehensive knowledge of epigenetic modifications in plants, encompassing histone modifications in regulating gene expression, is not completely ingrained. It is noteworthy that histone deacetylation and histone H3 lysine 27 trimethylation (H3K27me3) play a role in repressing transcription in eukaryotes. In contrast, histone acetylation (H3K9ac) and H3K4me3 have been inevitably linked to the stimulation of gene expression, which significantly influences plant development and plays a role in plant responses to biotic and abiotic stresses. To our knowledge this the first multiclass classifier for predicting histone modification in plants. <doi:10.1186/s12864-019-5489-4>.

Install

R (CRAN)Ubuntu (r2u)

install.packages("OpEnHiMR")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# one-time r2u setup for Ubuntu (noble)

curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash

# then install

sudo apt install r-cran-openhimr

Fast Ubuntu binaries via r2u (no compilation). Run the setup once per machine.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Code health

None

Tests · ratio 0.00

not tracked

Coverage

None

Vignettes

README

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

6.3K

CRAN downloads in the past year

Rank #6,450 · ~17/day · ~524/mo

54430 days

1.7K90 days

6.3K1 year

Also on93 r2u

Source & community

Repository stars, issues, and contributor activity are not tracked yet.

Dependencies

Declared dependencies

16 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (16)

Biostrings devtools tidyverse seqinr splitstackshape entropy party e1071 caret randomForest gbm stats basestringr ftrCOOL dplyr RCurl

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code

473Lines of code

1Exported functions

Code & tests

Open call graph →

Line coverage

–

Expression

–

Tests / Examples

–

Functions

1 0 exported

Complexity

35 avg / 35 max

Call network

1 nodes / 0 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (10)

Maintainer (1)

Dipro Sinha

Author, Maintainer

Authors (9)

Sunil Archak

Author

Sougata Bhattacharjee

Author

Neeraj Budhlakoti

Author

Saikath Das

Author

Girish Kumar Jha

Author

Dwijesh Chandra Mishra

Author

Sneha Murmu

Author

Sudhir Srivastava

Author

Md Yeasin

Author

Release timeline

2 releases. Pick two to compare their code metrics; R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.1.1Latest
2024-05-30 · current release
0.1.0
2024-05-26

Package metadata

First published: 2024-05-26
Total releases: 2 / 2 yrs
License: GPL-3 OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet