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OpEnHiMR

Optimization Based Ensemble Model for Prediction of Histone Modifications in Rice

v0.1.1 · May 30, 2024 · GPL-3

Description

The comprehensive knowledge of epigenetic modifications in plants, encompassing histone modifications in regulating gene expression, is not completely ingrained. It is noteworthy that histone deacetylation and histone H3 lysine 27 trimethylation (H3K27me3) play a role in repressing transcription in eukaryotes. In contrast, histone acetylation (H3K9ac) and H3K4me3 have been inevitably linked to the stimulation of gene expression, which significantly influences plant development and plays a role in plant responses to biotic and abiotic stresses. To our knowledge this the first multiclass classifier for predicting histone modification in plants. <doi:10.1186/s12864-019-5489-4>.

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Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies Biostrings devtools tidyverse seqinr splitstackshape entropy party e1071 caret randomForest gbm stringr ftrCOOL dplyr RCurl OpEnHiMR

Version History

new 0.1.1 Mar 10, 2026
updated 0.1.1 ← 0.1.0 diff May 29, 2024
new 0.1.0 May 25, 2024