Description
Predicts amyloid proteins using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line and shiny-based GUI.
Downloads
350
Last 30 days
12589th
859
Last 90 days
3.2K
Last year
Trend: +54.9% (30d vs prior 30d)
0
Last 30 days
25
Last 90 days
106
Last year
Trend: -100% (30d vs prior 30d)
11
Last 7 days
46
Last 30 days
1
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Michal Burdukiewicz <michalburdukiewicz@gmail.com>’
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Found the following URLs which should use \doi (with the DOI name only):
File ‘AmyloGram-package.Rd’:
https://doi.org/10.1038/s41598-017-13210-9
CRAN incoming feasibility
Maintainer: ‘Michal Burdukiewicz <michalburdukiewicz@gmail.com>’
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Found the following URLs which should use \doi (with the DOI name only):
File ‘AmyloGram-package.Rd’:
https://doi.org/10.1038/s41598-017-13210-9
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Michal Burdukiewicz <michalburdukiewicz@gmail.com>’
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Found the following URLs which should use \doi (with the DOI name only):
File ‘AmyloGram-package.Rd’:
https://doi.org/10.1038/s41598-017-13210-9
CRAN incoming feasibility
Maintainer: ‘Michal Burdukiewicz <michalburdukiewicz@gmail.com>’
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Found the following URLs which should use \doi (with the DOI name only):
File ‘AmyloGram-package.Rd’:
https://doi.org/10.1038/s41598-017-13210-9
Code & tests
Open call graph →Line coverage
–
Expression
–
Tests / Examples
–
Functions
6 3 exported
Complexity
2.7 avg / 9 max
Call network
6 nodes / 0 edges
Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
404
Files
35
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
3
Internal functions
3
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
66.7%
\dontrun example ratio
0%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.0.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
2
First release
2016-09-24
Latest release
2017-10-11
Avg cadence
382 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.