iSEEindex
Bioc currentiSEE extension for a landing page to a custom collection of data sets
Release Lineage
Entered 3.18 · Oct 25, 2023
Current · Requires R 4.6
Description
This package provides an interface to any collection of data sets within a single iSEE web-application. The main functionality of this package is to define a custom landing page allowing app maintainers to list a custom collection of data sets that users can selected from and directly load objects into an iSEE web-application.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
25 6 exported
Complexity
2.4 avg / 7 max
Call network
25 nodes / 20 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,911
Files
61
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
7
Internal functions
19
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.31
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
6
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
6
First release
2023-10-24
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 9 (1 internal)includes a package overview page
- Examples that run
- 100%8 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
11 development-tooling and community-health practices detected across 4 families in the upstream repository
Checks run against github.com/isee/iseeindex on 2026-10-21.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
GitHub Pages site last deployed 2024-10-18 · The repository has a site deploy workflow
Topics
People
- Kevin Rue-Albrecht author maintainer
- Denali Therapeutics funder
- Federico Marini author
- Thomas Sandmann contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("iSEEindex")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.