GSEABase
Bioc currentGene set enrichment data structures and methods
Release Lineage
Entered 2.1 · Oct 8, 2007
Current · Requires R 4.6
Description
This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
77 10 exported
Complexity
2.4 avg / 14 max
Call network
77 nodes / 82 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,611
Files
47
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
34
Internal functions
65
Testing
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
57.1%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.6.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
38
First release
2007-12-20
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 18includes a package overview page
- Examples that run
- 100%15 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 96%
- Return-value docs
- 67%
- Help pages citing references
- 17%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Topics
Depended on by (54)
Show 44 packagesHide 44 packages
Bioconductor (54)
Suggested by (14)
People
- Bioconductor Package Maintainer maintainer
- Seth Falcon author
- Robert Gentleman author
- Martin Morgan author
-
Paul Villafuerte
contributor
'GSEABase' vignette translation from Sweave to Rmarkdown / HTML
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("GSEABase")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.