GSEABase
Bioc currentGene set enrichment data structures and methods
Release Lineage
Entered 2.1 · Oct 8, 2007
Current · Requires R 4.6
Description
This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
77 10 exported
Complexity
2.4 avg / 14 max
Call network
77 nodes / 82 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,611
Files
50
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
34
Internal functions
65
Testing & CI
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
57.1%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.6.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
38
First release
2007-12-20
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 96%
- Return-value docs
- 67%
- References docs
- 17%
Topics
Depended on by (68)
Bioconductor (66)
CRAN (2)
People
- Bioconductor Package Maintainer maintainer
- Seth Falcon author
- Robert Gentleman author
- Martin Morgan author
- Paul Villafuerte contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("GSEABase")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.