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mogsa

Bioc current

Multiple omics data integrative clustering and gene set analysis

v1.46.0 · software · GPL-2

Release Lineage

Entered 3.1 · Apr 17, 2015

Current · Requires R 4.6

1.0 In 23 of 49 releases 3.23

Description

This package provide a method for doing gene set analysis based on multiple omics data.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

51 24 exported

Complexity

5.5 avg / 17 max

Call network

51 nodes / 33 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

5,604

Files

88

Compiled share

0%

Has compiled src

No

Language breakdown

R 2,244 (40%)Docs 2,737 (48.8%)Vignettes 623 (11.1%)

API

Exported functions

24

Internal functions

21

Recent export changes

v3.9+1 bootMoa

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.4.0

System requirements

C++ standard

License

GPL-2

License flags

SPDX valid, OSI approved

History

Versions

23

First release

2015-07-23

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

Dep drift

8

LOC over versions

v3.1: 3,294 LOCv3.2: 4,557 LOCv3.3: 4,683 LOCv3.4: 4,683 LOCv3.5: 4,857 LOCv3.6: 4,888 LOCv3.7: 4,888 LOCv3.8: 4,888 LOCv3.9: 5,096 LOCv3.10: 5,604 LOCv3.11: 5,604 LOCv3.12: 5,604 LOCv3.13: 5,604 LOCv3.14: 5,604 LOCv3.15: 5,604 LOCv3.16: 5,604 LOCv3.17: 5,604 LOCv3.18: 5,604 LOCv3.19: 5,604 LOCv3.20: 5,604 LOCv3.21: 5,604 LOCv3.22: 5,604 LOCv3.23: 5,604 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
98%
Return-value docs
96%
References docs
40%

Topics

People

Chen Meng

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("mogsa")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for mogsa version 1.46.0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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