ReportingTools
Bioc currentTools for making reports in various formats
Release Lineage
Entered 2.11 · Oct 3, 2012
Current · Requires R 4.6
Description
The ReportingTools software package enables users to easily display reports of analysis results generated from sources such as microarray and sequencing data. The package allows users to create HTML pages that may be viewed on a web browser such as Safari, or in other formats readable by programs such as Excel. Users can generate tables with sortable and filterable columns, make and display plots, and link table entries to other data sources such as NCBI or larger plots within the HTML page. Using the package, users can also produce a table of contents page to link various reports together for a particular project that can be viewed in a web browser. For more examples, please visit our site: http:// research-pub.gene.com/ReportingTools.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
62 14 exported
Complexity
3.8 avg / 15 max
Call network
62 nodes / 66 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
6,645
Files
139
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
14
Internal functions
46
Testing
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
13.6%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
28
First release
2012-10-01
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
9
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 22
- Examples that run
- 100%15 run in a plain check
- Exported functions with examples
- 80%
- Documented parameters
- 98%
- Return-value docs
- 80%
- Help pages citing references
- 0%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| jquery.dataTables-1.9.3 | – | – | – |
| jquery.dataTables.columnFilter | – | – | – |
| jquery.dataTables.plugins | – | – | – |
| jquery.dataTables.reprise | – | – | – |
| mockRnaSeqData | data.frame | 18,760 × 6 | No other package |
| reprise.table | – | – | – |
| reprise.table.bootstrap | – | – | – |
Topics
Depended on by (1)
Bioconductor (1)
Suggested by (4)
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' entry:
citation("ReportingTools")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1093/bioinformatics/btt551.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-20, which the citation names so these numbers can be found later. More on citing and the projects behind them.