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NonCodingRNA_Bacteria

NonCoding Models for Common Non-Coding RNA Families

Bundled with DECIPHER · exported, loads via data()

Class
list
Elements
46
Missing
0
Format
rda · xz
version 3 · 396 KB
File
data/NonCodingRNA_Bacteria.RData
Fingerprint
b9e18051
Source
Models were built from sequences belonging to families in tRNADB-CE (http://trna.ie.niigata-u.ac.jp/cgi-bin/trnadb/index.cgi) or Rfam (http://rfam.xfam.org).
About this object
A list with no shape constraintsRows of cells of visibly different widths, one below the next, with nothing lining them up and nothing in them, and under them a small block with a header band: an element of a list can be another structure. There is no common length, so there is no row count.list

R's general-purpose container. Elements can be any type and any size. R object catalogue

Structure
Distinct
46
Nesting depth
4
Element length
5 – 5
Total length
230
Nested rows
772
Nested columns
9
Nested schema
varies between elements
Elements
Element
Type
Distinct
Missing
Summary
tRNA-Ala
list
5
0
nested·14 rows nested·9 cols
Element length
0 – 108
Total length
192
Nesting depth
3
Nested rows
14
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
10 – 10
Total length
90
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
63
0
94 – 4056mean 1144
Min.
94
1st Qu.
557.75
Median
996.5
Mean
1143.67
3rd Qu.
1610.75
Max.
4056
Std. dev
787.939
Skewness
1.093
Kurtosis
1.513
Outliers
10 low · 1 high
lengthScores
numeric
108
0
-216.834 – 4.2177mean -70.34
Min.
-216.834
1st Qu.
-98.047
Median
-68.2447
Mean
-70.3428
3rd Qu.
-34.2369
Max.
4.2177
Std. dev
47.7282
Skewness
-0.7369
Kurtosis
0.5531
Outliers
33 low · 0 high
tRNA-Arg
list
5
0
nested·11 rows nested·9 cols
Element length
0 – 256
Total length
403
Nesting depth
3
Nested rows
11
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
7 – 7
Total length
63
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
212
0
11 – 1170mean 283.8
Min.
11
1st Qu.
120.5
Median
217.5
Mean
283.793
3rd Qu.
363.5
Max.
1170
Std. dev
236.706
Skewness
1.566
Kurtosis
2.208
Outliers
210 low · 21 high
lengthScores
numeric
127
0
-117.612 – 3.7593mean -48.31
Min.
-117.612
1st Qu.
-82.2405
Median
-38.6957
Mean
-48.3124
3rd Qu.
-15.27
Max.
3.7593
Std. dev
37.7182
Skewness
-0.3335
Kurtosis
-1.278
tRNA-Asn
list
5
0
nested·13 rows nested·9 cols
Element length
0 – 113
Total length
197
Nesting depth
3
Nested rows
13
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
9 – 9
Total length
81
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
63
0
132 – 3049mean 1142
Min.
132
1st Qu.
510.25
Median
1139
Mean
1141.8
3rd Qu.
1580.25
Max.
3049
Std. dev
731.107
Skewness
0.7219
Kurtosis
-0.0441
lengthScores
numeric
113
0
-217.47 – 4.3135mean -71.7
Min.
-217.47
1st Qu.
-100.341
Median
-70.193
Mean
-71.7026
3rd Qu.
-34.9288
Max.
4.3135
Std. dev
48.2261
Skewness
-0.6913
Kurtosis
0.4269
Outliers
33 low · 0 high
tRNA-Asp
list
5
0
nested·11 rows nested·9 cols
Element length
0 – 120
Total length
204
Nesting depth
3
Nested rows
11
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
9 – 9
Total length
81
Nesting depth
2
hairpins
list
11
0
nested
Element length
2 – 2
Total length
22
Nesting depth
2
kmers
integer
64
0
135 – 3671mean 1156
Min.
135
1st Qu.
443.75
Median
907.5
Mean
1155.86
3rd Qu.
1661
Max.
3671
Std. dev
867.199
Skewness
0.9182
Kurtosis
0.1783
Outliers
10 low · 1 high
lengthScores
numeric
120
0
-218.972 – 4.3016mean -72.11
Min.
-218.972
1st Qu.
-100.19
Median
-69.6179
Mean
-72.1063
3rd Qu.
-35.1513
Max.
4.3016
Std. dev
49.1593
Skewness
-0.7155
Kurtosis
0.3969
Outliers
33 low · 0 high
tRNA-Cys
list
5
0
nested·12 rows nested·9 cols
Element length
0 – 113
Total length
197
Nesting depth
3
Nested rows
12
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
8 – 8
Total length
72
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
63
0
246 – 2733mean 1117
Min.
246
1st Qu.
632.25
Median
1004
Mean
1117.47
3rd Qu.
1564.25
Max.
2733
Std. dev
601.93
Skewness
0.7445
Kurtosis
-0.3353
lengthScores
numeric
113
0
-222.795 – 4.2392mean -73.47
Min.
-222.795
1st Qu.
-102.659
Median
-71.8493
Mean
-73.4665
3rd Qu.
-35.7075
Max.
4.2392
Std. dev
49.3262
Skewness
-0.6946
Kurtosis
0.4378
Outliers
33 low · 0 high
tRNA-Gln
list
5
0
nested·13 rows nested·9 cols
Element length
0 – 114
Total length
198
Nesting depth
3
Nested rows
13
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
10 – 10
Total length
90
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
64
0
145 – 3314mean 1130
Min.
145
1st Qu.
713
Median
952.5
Mean
1129.89
3rd Qu.
1525.25
Max.
3314
Std. dev
621.054
Skewness
1.064
Kurtosis
1.161
Outliers
10 low · 1 high
lengthScores
numeric
114
0
-215.344 – 4.3239mean -74.7
Min.
-215.344
1st Qu.
-106.582
Median
-75.7938
Mean
-74.7027
3rd Qu.
-39.1388
Max.
4.3239
Std. dev
46.6756
Skewness
-0.4275
Kurtosis
0.0744
Outliers
11 low · 0 high
tRNA-Glu
list
5
0
nested·11 rows nested·9 cols
Element length
0 – 121
Total length
205
Nesting depth
3
Nested rows
11
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
8 – 8
Total length
72
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
64
0
181 – 3163mean 1140
Min.
181
1st Qu.
651.25
Median
960
Mean
1139.52
3rd Qu.
1592
Max.
3163
Std. dev
694.801
Skewness
0.8426
Kurtosis
0.145
Outliers
10 low · 1 high
lengthScores
numeric
121
0
-114.262 – 3.85mean -47.86
Min.
-114.262
1st Qu.
-79.2076
Median
-41.2749
Mean
-47.8552
3rd Qu.
-16.5941
Max.
3.85
Std. dev
35.7815
Skewness
-0.3109
Kurtosis
-1.215
tRNA-Gly
list
5
0
nested·12 rows nested·9 cols
Element length
0 – 256
Total length
396
Nesting depth
3
Nested rows
12
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
9 – 9
Total length
81
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
202
0
15 – 1297mean 276.9
Min.
15
1st Qu.
82.75
Median
164
Mean
276.914
3rd Qu.
360
Max.
1297
Std. dev
289.951
Skewness
1.821
Kurtosis
2.739
Outliers
240 low · 24 high
lengthScores
numeric
120
0
-112.746 – 3.6264mean -44.27
Min.
-112.746
1st Qu.
-77.4879
Median
-32.5322
Mean
-44.2717
3rd Qu.
-11.6331
Max.
3.6264
Std. dev
36.7833
Skewness
-0.3934
Kurtosis
-1.286
tRNA-His
list
5
0
nested·12 rows nested·9 cols
Element length
0 – 113
Total length
197
Nesting depth
3
Nested rows
12
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
10 – 10
Total length
90
Nesting depth
2
hairpins
list
11
0
nested
Element length
2 – 2
Total length
22
Nesting depth
2
kmers
integer
63
0
145 – 3744mean 1152
Min.
145
1st Qu.
436.5
Median
1170.5
Mean
1151.81
3rd Qu.
1539.75
Max.
3744
Std. dev
799.674
Skewness
1.081
Kurtosis
1.105
Outliers
20 low · 2 high
lengthScores
numeric
113
0
-221.319 – 4.2133mean -72.51
Min.
-221.319
1st Qu.
-101.016
Median
-71.0989
Mean
-72.5117
3rd Qu.
-36.1832
Max.
4.2133
Std. dev
48.5496
Skewness
-0.6987
Kurtosis
0.4946
Outliers
33 low · 0 high
tRNA-Ile
list
5
0
nested·12 rows nested·9 cols
Element length
0 – 110
Total length
194
Nesting depth
3
Nested rows
12
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
8 – 8
Total length
72
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
64
0
217 – 3441mean 1160
Min.
217
1st Qu.
530
Median
1145
Mean
1159.95
3rd Qu.
1590
Max.
3441
Std. dev
695.19
Skewness
0.7167
Kurtosis
0.2714
Outliers
10 low · 1 high
lengthScores
numeric
110
0
-216.415 – 4.1785mean -70.61
Min.
-216.415
1st Qu.
-98.284
Median
-69.4211
Mean
-70.6056
3rd Qu.
-34.352
Max.
4.1785
Std. dev
47.301
Skewness
-0.6991
Kurtosis
0.5192
Outliers
33 low · 0 high
tRNA-Leu
list
5
0
nested·15 rows nested·9 cols
Element length
0 – 256
Total length
424
Nesting depth
3
Nested rows
15
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
11 – 11
Total length
99
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
214
0
24 – 1394mean 320.7
Min.
24
1st Qu.
115.75
Median
228.5
Mean
320.719
3rd Qu.
457
Max.
1394
Std. dev
268.448
Skewness
1.296
Kurtosis
1.322
Outliers
90 low · 9 high
lengthScores
numeric
148
0
-94.0806 – 3.699mean -39.66
Min.
-94.0806
1st Qu.
-65.042
Median
-35.6267
Mean
-39.6597
3rd Qu.
-14.4092
Max.
3.699
Std. dev
29.335
Skewness
-0.2774
Kurtosis
-1.192
tRNA-Lys
list
5
0
nested·13 rows nested·9 cols
Element length
0 – 112
Total length
196
Nesting depth
3
Nested rows
13
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
9 – 9
Total length
81
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
63
0
136 – 3089mean 1145
Min.
136
1st Qu.
624.5
Median
1099
Mean
1144.75
3rd Qu.
1488
Max.
3089
Std. dev
654.346
Skewness
0.6355
Kurtosis
0.1415
Outliers
20 low · 2 high
lengthScores
numeric
112
0
-215.924 – 4.2556mean -71.29
Min.
-215.924
1st Qu.
-99.2063
Median
-69.2234
Mean
-71.2895
3rd Qu.
-34.8031
Max.
4.2556
Std. dev
47.8136
Skewness
-0.6814
Kurtosis
0.4186
Outliers
33 low · 0 high
tRNA-Met
list
5
0
nested·15 rows nested·9 cols
Element length
0 – 105
Total length
189
Nesting depth
3
Nested rows
15
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
11 – 11
Total length
99
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
63
0
170 – 3209mean 1158
Min.
170
1st Qu.
553.5
Median
1035
Mean
1158.47
3rd Qu.
1582.25
Max.
3209
Std. dev
697.68
Skewness
0.6589
Kurtosis
-0.1819
Outliers
10 low · 1 high
lengthScores
numeric
105
0
-215.767 – 4.2775mean -69.75
Min.
-215.767
1st Qu.
-97.9757
Median
-69.2713
Mean
-69.7512
3rd Qu.
-34.4402
Max.
4.2775
Std. dev
46.1031
Skewness
-0.6746
Kurtosis
0.5935
Outliers
22 low · 0 high
tRNA-Phe
list
5
0
nested·13 rows nested·9 cols
Element length
0 – 112
Total length
196
Nesting depth
3
Nested rows
13
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
9 – 9
Total length
81
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
63
0
38 – 2732mean 1146
Min.
38
1st Qu.
664
Median
1189
Mean
1146.03
3rd Qu.
1618
Max.
2732
Std. dev
674.157
Skewness
0.1265
Kurtosis
-0.6935
lengthScores
numeric
112
0
-215.873 – 4.2656mean -71.3
Min.
-215.873
1st Qu.
-99.2474
Median
-69.2631
Mean
-71.2979
3rd Qu.
-34.7464
Max.
4.2656
Std. dev
47.8025
Skewness
-0.68
Kurtosis
0.4161
Outliers
33 low · 0 high
tRNA-Pro
list
5
0
nested·13 rows nested·9 cols
Element length
0 – 103
Total length
187
Nesting depth
3
Nested rows
13
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
10 – 10
Total length
90
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
64
0
61 – 4052mean 1161
Min.
61
1st Qu.
525.5
Median
1118.5
Mean
1161.36
3rd Qu.
1557.75
Max.
4052
Std. dev
800.086
Skewness
1.017
Kurtosis
1.474
Outliers
20 low · 2 high
lengthScores
numeric
103
0
-222.561 – 4.2372mean -69.56
Min.
-222.561
1st Qu.
-96.1344
Median
-67.7923
Mean
-69.5551
3rd Qu.
-34.5452
Max.
4.2372
Std. dev
47.2658
Skewness
-0.8055
Kurtosis
0.8832
Outliers
33 low · 0 high
tRNA-Ser
list
5
0
nested·14 rows nested·9 cols
Element length
0 – 256
Total length
438
Nesting depth
3
Nested rows
14
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
10 – 10
Total length
90
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
210
0
26 – 1404mean 337.9
Min.
26
1st Qu.
139
Median
246.5
Mean
337.926
3rd Qu.
438
Max.
1404
Std. dev
281.126
Skewness
1.541
Kurtosis
1.971
Outliers
190 low · 19 high
lengthScores
numeric
162
0
-58.825 – 3.466mean -26.91
Min.
-58.825
1st Qu.
-42.264
Median
-27.6385
Mean
-26.9134
3rd Qu.
-11.8643
Max.
3.466
Std. dev
17.6897
Skewness
0.0816
Kurtosis
-1.225
tRNA-Thr
list
5
0
nested·13 rows nested·9 cols
Element length
0 – 122
Total length
206
Nesting depth
3
Nested rows
13
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
10 – 10
Total length
90
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
64
0
64 – 3100mean 1139
Min.
64
1st Qu.
610
Median
984.5
Mean
1138.59
3rd Qu.
1537.5
Max.
3100
Std. dev
667.692
Skewness
0.7719
Kurtosis
0.056
Outliers
10 low · 1 high
lengthScores
numeric
122
0
-114.285 – 3.9947mean -50.76
Min.
-114.285
1st Qu.
-78.9023
Median
-48.5181
Mean
-50.7572
3rd Qu.
-20.975
Max.
3.9947
Std. dev
34.6154
Skewness
-0.1723
Kurtosis
-1.165
tRNA-Trp
list
5
0
nested·13 rows nested·9 cols
Element length
0 – 120
Total length
204
Nesting depth
3
Nested rows
13
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
10 – 10
Total length
90
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
60
0
155 – 3387mean 1138
Min.
155
1st Qu.
514.25
Median
1093
Mean
1137.97
3rd Qu.
1532.25
Max.
3387
Std. dev
678.738
Skewness
0.7361
Kurtosis
0.4028
Outliers
10 low · 1 high
lengthScores
numeric
120
0
-111.736 – 3.6217mean -44.19
Min.
-111.736
1st Qu.
-76.5204
Median
-33.2639
Mean
-44.1881
3rd Qu.
-12.4303
Max.
3.6217
Std. dev
36.0786
Skewness
-0.3934
Kurtosis
-1.258
tRNA-Tyr
list
5
0
nested·18 rows nested·9 cols
Element length
0 – 135
Total length
219
Nesting depth
3
Nested rows
18
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
14 – 14
Total length
126
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
62
0
133 – 2847mean 1290
Min.
133
1st Qu.
718
Median
1274
Mean
1289.91
3rd Qu.
1715.5
Max.
2847
Std. dev
679.794
Skewness
0.3183
Kurtosis
-0.6098
lengthScores
numeric
135
0
-188.04 – 4.2608mean -66.47
Min.
-188.04
1st Qu.
-95.2354
Median
-65.2768
Mean
-66.4727
3rd Qu.
-32.1496
Max.
4.2608
Std. dev
43.4939
Skewness
-0.4573
Kurtosis
-0.1552
tRNA-Val
list
5
0
nested·12 rows nested·9 cols
Element length
0 – 121
Total length
205
Nesting depth
3
Nested rows
12
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
8 – 8
Total length
72
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
64
0
99 – 3128mean 1146
Min.
99
1st Qu.
545.25
Median
1098.5
Mean
1145.98
3rd Qu.
1503
Max.
3128
Std. dev
687.234
Skewness
0.7241
Kurtosis
0.0133
Outliers
10 low · 1 high
lengthScores
numeric
121
0
-143.826 – 4.0943mean -61.37
Min.
-143.826
1st Qu.
-92.5115
Median
-62.3631
Mean
-61.3683
3rd Qu.
-30.2471
Max.
4.0943
Std. dev
37.612
Skewness
0.0004
Kurtosis
-1.046
tRNA-Sec
list
5
0
nested·24 rows nested·9 cols
Element length
0 – 135
Total length
219
Nesting depth
3
Nested rows
24
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
20 – 20
Total length
180
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
63
0
159 – 3998mean 1429
Min.
159
1st Qu.
709
Median
1213.5
Mean
1428.88
3rd Qu.
1874.25
Max.
3998
Std. dev
889.157
Skewness
0.9174
Kurtosis
0.2391
Outliers
20 low · 2 high
lengthScores
numeric
135
0
-222.502 – 4.0331mean -69.08
Min.
-222.502
1st Qu.
-96.0989
Median
-67.7339
Mean
-69.0757
3rd Qu.
-34.0537
Max.
4.0331
Std. dev
46.5895
Skewness
-0.7988
Kurtosis
0.9225
Outliers
44 low · 0 high
rRNA_5S-RF00001
list
5
0
nested·24 rows nested·9 cols
Element length
0 – 256
Total length
473
Nesting depth
3
Nested rows
24
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
20 – 20
Total length
180
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
218
0
46 – 1656mean 417.8
Min.
46
1st Qu.
201.5
Median
332
Mean
417.84
3rd Qu.
546
Max.
1656
Std. dev
291.418
Skewness
1.251
Kurtosis
1.445
Outliers
100 low · 10 high
lengthScores
numeric
197
0
-108.411 – 3.8715mean -47.06
Min.
-108.411
1st Qu.
-75.5337
Median
-43.8846
Mean
-47.0639
3rd Qu.
-18.4913
Max.
3.8715
Std. dev
33.2717
Skewness
-0.2271
Kurtosis
-1.177
rRNA_16S-RF00177
list
5
0
nested·28 rows nested·9 cols
Element length
0 – 5,031
Total length
5,307
Nesting depth
3
Nested rows
28
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
8 – 8
Total length
72
Nesting depth
2
hairpins
list
11
0
nested
Element length
20 – 20
Total length
220
Nesting depth
2
kmers
integer
253
0
1443 – 14765mean 6019
Min.
1443
1st Qu.
4153.75
Median
5661
Mean
6019.1
3rd Qu.
7692.5
Max.
14765
Std. dev
2575.05
Skewness
0.7218
Kurtosis
0.5002
Outliers
50 low · 5 high
lengthScores
numeric
5,031
0
-122.267 – 4.3432mean -64.04
Min.
-122.267
1st Qu.
-98.1473
Median
-65.9887
Mean
-64.0422
3rd Qu.
-31.8908
Max.
4.3432
Std. dev
37.6854
Skewness
0.1694
Kurtosis
-1.22
rRNA_23S-RF02541
list
5
0
nested·31 rows nested·9 cols
Element length
0 – 9,323
Total length
9,599
Nesting depth
3
Nested rows
31
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
11 – 11
Total length
99
Nesting depth
2
hairpins
list
11
0
nested
Element length
20 – 20
Total length
220
Nesting depth
2
kmers
integer
256
0
4344 – 33782mean 1.181e+4
Min.
4344
1st Qu.
7934.75
Median
10696
Mean
11806.2
3rd Qu.
14187
Max.
33782
Std. dev
5065.26
Skewness
1.101
Kurtosis
1.35
Outliers
100 low · 10 high
lengthScores
numeric
9,323
0
-218.967 – 3.9237mean -33.03
Min.
-218.967
1st Qu.
-47.5792
Median
-35.5562
Mean
-33.0251
3rd Qu.
-19.043
Max.
3.9237
Std. dev
19.917
Skewness
-1.212
Kurtosis
9.948
Outliers
5858 low · 0 high
tmRNA-RF00023
list
5
0
nested·26 rows nested·9 cols
Element length
0 – 758
Total length
1,034
Nesting depth
3
Nested rows
26
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
20 – 20
Total length
180
Nesting depth
2
hairpins
list
11
0
nested
Element length
6 – 6
Total length
66
Nesting depth
2
kmers
integer
231
0
577 – 3820mean 1451
Min.
577
1st Qu.
1136.75
Median
1358
Mean
1451.47
3rd Qu.
1693.75
Max.
3820
Std. dev
480.594
Skewness
1.163
Kurtosis
2.602
Outliers
100 low · 10 high
lengthScores
numeric
758
0
-218.434 – 2.8385mean -14.26
Min.
-218.434
1st Qu.
-16.8436
Median
-11.3493
Mean
-14.2552
3rd Qu.
-4.3277
Max.
2.8385
Std. dev
24.2296
Skewness
-5.374
Kurtosis
33.33
Outliers
3232 low · 0 high
tmRNA_Alpha-RF01849
list
5
0
nested·27 rows nested·9 cols
Element length
0 – 1,040
Total length
1,316
Nesting depth
3
Nested rows
27
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
17 – 17
Total length
153
Nesting depth
2
hairpins
list
11
0
nested
Element length
10 – 10
Total length
110
Nesting depth
2
kmers
integer
237
0
243 – 4587mean 1146
Min.
243
1st Qu.
703.5
Median
1012
Mean
1145.66
3rd Qu.
1409
Max.
4587
Std. dev
635.456
Skewness
1.732
Kurtosis
4.8
Outliers
90 low · 9 high
lengthScores
numeric
1,040
0
-39.0887 – 3.1958mean -16.34
Min.
-39.0887
1st Qu.
-25.5288
Median
-17.5342
Mean
-16.3381
3rd Qu.
-7.5519
Max.
3.1958
Std. dev
10.6522
Skewness
0.2261
Kurtosis
-1.078
RNase_P_class_A-RF00010
list
5
0
nested·33 rows nested·9 cols
Element length
0 – 1,441
Total length
1,717
Nesting depth
3
Nested rows
33
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
20 – 20
Total length
180
Nesting depth
2
hairpins
list
11
0
nested
Element length
13 – 13
Total length
143
Nesting depth
2
kmers
integer
247
0
397 – 4853mean 1503
Min.
397
1st Qu.
795
Median
1284.5
Mean
1502.63
3rd Qu.
1922.5
Max.
4853
Std. dev
881.226
Skewness
1.167
Kurtosis
0.9504
Outliers
100 low · 10 high
lengthScores
numeric
1,441
0
-21.5384 – 2.7594mean -10.09
Min.
-21.5384
1st Qu.
-16.8404
Median
-10.6073
Mean
-10.0906
3rd Qu.
-3.6478
Max.
2.7594
Std. dev
7.4588
Skewness
0.1743
Kurtosis
-1.244
RNase_P_class_B-RF00011
list
5
0
nested·28 rows nested·9 cols
Element length
0 – 742
Total length
1,018
Nesting depth
3
Nested rows
28
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
15 – 15
Total length
135
Nesting depth
2
hairpins
list
11
0
nested
Element length
13 – 13
Total length
143
Nesting depth
2
kmers
integer
240
0
183 – 3982mean 1008
Min.
183
1st Qu.
586.5
Median
893.5
Mean
1007.82
3rd Qu.
1341.75
Max.
3982
Std. dev
575.085
Skewness
1.4
Kurtosis
3.259
Outliers
50 low · 5 high
lengthScores
numeric
742
0
-53.499 – 2.9203mean -20.31
Min.
-53.499
1st Qu.
-36.7809
Median
-14.7987
Mean
-20.3069
3rd Qu.
-4.1713
Max.
2.9203
Std. dev
17.8912
Skewness
-0.3729
Kurtosis
-1.286
SsrS-RF00013
list
5
0
nested·18 rows nested·9 cols
Element length
0 – 435
Total length
711
Nesting depth
3
Nested rows
18
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
14 – 14
Total length
126
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
226
0
314 – 1851mean 698.4
Min.
314
1st Qu.
512.75
Median
647
Mean
698.449
3rd Qu.
817.75
Max.
1851
Std. dev
256.945
Skewness
1.263
Kurtosis
2.03
Outliers
110 low · 11 high
lengthScores
numeric
435
0
-55.7007 – 3.053mean -23.63
Min.
-55.7007
1st Qu.
-41.3669
Median
-22.489
Mean
-23.6251
3rd Qu.
-5.5397
Max.
3.053
Std. dev
19.0139
Skewness
-0.1514
Kurtosis
-1.427
Intron_Gp_I-RF00028
list
5
0
nested·18 rows nested·9 cols
Element length
0 – 1,460
Total length
1,736
Nesting depth
3
Nested rows
18
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
15 – 15
Total length
135
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
162
0
81 – 704mean 206.3
Min.
81
1st Qu.
146.75
Median
184
Mean
206.277
3rd Qu.
248.25
Max.
704
Std. dev
92.9311
Skewness
1.897
Kurtosis
5.771
Outliers
80 low · 8 high
lengthScores
numeric
1,460
0
-9.5626 – 2.3098mean -4.258
Min.
-9.5626
1st Qu.
-7.4714
Median
-4.8372
Mean
-4.2581
3rd Qu.
-1.2013
Max.
2.3098
Std. dev
3.6481
Skewness
0.3243
Kurtosis
-1.161
Intron_Gp_II-RF00029
list
5
0
nested·11 rows nested·9 cols
Element length
0 – 279
Total length
555
Nesting depth
3
Nested rows
11
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
9 – 9
Total length
81
Nesting depth
2
hairpins
list
11
0
nested
Element length
2 – 2
Total length
22
Nesting depth
2
kmers
integer
200
0
67 – 1399mean 330.9
Min.
67
1st Qu.
175.75
Median
257.5
Mean
330.887
3rd Qu.
397.25
Max.
1399
Std. dev
236.002
Skewness
1.838
Kurtosis
3.697
Outliers
240 low · 24 high
lengthScores
numeric
279
0
-192.205 – 2.4063mean -7.923
Min.
-192.205
1st Qu.
-8.0761
Median
-5.3065
Mean
-7.923
3rd Qu.
-1.5353
Max.
2.4063
Std. dev
19.8384
Skewness
-6.399
Kurtosis
46.12
Outliers
1313 low · 0 high
SmallSRP-RF00169
list
5
0
nested·21 rows nested·9 cols
Element length
0 – 256
Total length
440
Nesting depth
3
Nested rows
21
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
16 – 16
Total length
144
Nesting depth
2
hairpins
list
11
0
nested
Element length
5 – 5
Total length
55
Nesting depth
2
kmers
integer
166
0
40 – 640mean 172.7
Min.
40
1st Qu.
98.75
Median
129
Mean
172.676
3rd Qu.
211
Max.
640
Std. dev
113.172
Skewness
1.829
Kurtosis
3.581
Outliers
150 low · 15 high
lengthScores
numeric
164
0
-107.544 – 3.8184mean -44.76
Min.
-107.544
1st Qu.
-73.0828
Median
-39.8464
Mean
-44.7633
3rd Qu.
-16.0915
Max.
3.8184
Std. dev
33.2059
Skewness
-0.3134
Kurtosis
-1.156
Cyclic-di-GMP_Riboswitch-RF01051
list
5
0
nested·17 rows nested·9 cols
Element length
0 – 291
Total length
567
Nesting depth
3
Nested rows
17
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
14 – 14
Total length
126
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
200
0
72 – 2235mean 339.4
Min.
72
1st Qu.
168
Median
259
Mean
339.371
3rd Qu.
405.25
Max.
2235
Std. dev
285.583
Skewness
2.926
Kurtosis
12.02
Outliers
190 low · 19 high
lengthScores
numeric
291
0
-210.758 – 2.7331mean -11.39
Min.
-210.758
1st Qu.
-12.0815
Median
-8.3421
Mean
-11.3923
3rd Qu.
-3.2022
Max.
2.7331
Std. dev
23.7187
Skewness
-5.762
Kurtosis
36.97
Outliers
1313 low · 0 high
Cyclic-di-AMP_Riboswitch-RF00379
list
5
0
nested·23 rows nested·9 cols
Element length
0 – 440
Total length
716
Nesting depth
3
Nested rows
23
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
19 – 19
Total length
171
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
195
0
54 – 1237mean 247
Min.
54
1st Qu.
120.5
Median
193
Mean
246.973
3rd Qu.
340.25
Max.
1237
Std. dev
173.928
Skewness
1.811
Kurtosis
4.813
Outliers
100 low · 10 high
lengthScores
numeric
440
0
-41.8726 – 2.1912mean -5.267
Min.
-41.8726
1st Qu.
-7.0486
Median
-4.3497
Mean
-5.2667
3rd Qu.
-0.8586
Max.
2.1912
Std. dev
7.2842
Skewness
-2.596
Kurtosis
8.231
Outliers
2929 low · 0 high
T-box_Leader-RF00230
list
5
0
nested·27 rows nested·9 cols
Element length
0 – 746
Total length
1,022
Nesting depth
3
Nested rows
27
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
20 – 20
Total length
180
Nesting depth
2
hairpins
list
11
0
nested
Element length
7 – 7
Total length
77
Nesting depth
2
kmers
integer
223
0
245 – 3329mean 914.2
Min.
245
1st Qu.
558.75
Median
782
Mean
914.227
3rd Qu.
1120.25
Max.
3329
Std. dev
491.076
Skewness
1.493
Kurtosis
2.94
Outliers
120 low · 12 high
lengthScores
numeric
746
0
-16.025 – 2.5358mean -7.228
Min.
-16.025
1st Qu.
-12.2479
Median
-7.8037
Mean
-7.2277
3rd Qu.
-2.3445
Max.
2.5358
Std. dev
5.6651
Skewness
0.1988
Kurtosis
-1.224
Ribosomal_Protein_L10_Leader-RF00557
list
5
0
nested·13 rows nested·9 cols
Element length
0 – 416
Total length
692
Nesting depth
3
Nested rows
13
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
11 – 11
Total length
99
Nesting depth
2
hairpins
list
11
0
nested
Element length
2 – 2
Total length
22
Nesting depth
2
kmers
integer
233
0
101 – 3681mean 545.5
Min.
101
1st Qu.
295.75
Median
445.5
Mean
545.539
3rd Qu.
648.25
Max.
3681
Std. dev
377.365
Skewness
3.027
Kurtosis
17.92
Outliers
160 low · 16 high
lengthScores
numeric
416
0
-27.3399 – 2.4146mean -6.116
Min.
-27.3399
1st Qu.
-9.6997
Median
-6.2262
Mean
-6.1163
3rd Qu.
-1.7233
Max.
2.4146
Std. dev
5.6447
Skewness
-0.7646
Kurtosis
1.241
Outliers
99 low · 0 high
Cobalamin_Riboswitch-RF00174
list
5
0
nested·18 rows nested·9 cols
Element length
0 – 895
Total length
1,171
Nesting depth
3
Nested rows
18
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
11 – 11
Total length
99
Nesting depth
2
hairpins
list
11
0
nested
Element length
7 – 7
Total length
77
Nesting depth
2
kmers
integer
230
0
182 – 2635mean 770.5
Min.
182
1st Qu.
478.75
Median
646.5
Mean
770.457
3rd Qu.
958.25
Max.
2635
Std. dev
423.221
Skewness
1.476
Kurtosis
2.645
Outliers
120 low · 12 high
lengthScores
numeric
895
0
-21.1119 – 2.6675mean -9.915
Min.
-21.1119
1st Qu.
-16.7557
Median
-10.7957
Mean
-9.9153
3rd Qu.
-3.1462
Max.
2.6675
Std. dev
7.4974
Skewness
0.1862
Kurtosis
-1.317
TPP_Riboswitch-RF00059
list
5
0
nested·14 rows nested·9 cols
Element length
0 – 381
Total length
657
Nesting depth
3
Nested rows
14
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
10 – 10
Total length
90
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
209
0
92 – 2028mean 412.9
Min.
92
1st Qu.
238.5
Median
320.5
Mean
412.922
3rd Qu.
487.25
Max.
2028
Std. dev
277.481
Skewness
2.13
Kurtosis
5.889
Outliers
190 low · 19 high
lengthScores
numeric
381
0
-39.9834 – 2.7689mean -8.827
Min.
-39.9834
1st Qu.
-13.2546
Median
-9.1392
Mean
-8.8268
3rd Qu.
-3.516
Max.
2.7689
Std. dev
7.3382
Skewness
-0.9478
Kurtosis
2.413
Outliers
1010 low · 0 high
SAM_Riboswitch-RF00162
list
5
0
nested·19 rows nested·9 cols
Element length
0 – 447
Total length
723
Nesting depth
3
Nested rows
19
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
14 – 14
Total length
126
Nesting depth
2
hairpins
list
11
0
nested
Element length
5 – 5
Total length
55
Nesting depth
2
kmers
integer
215
0
77 – 1677mean 432.9
Min.
77
1st Qu.
212.75
Median
323.5
Mean
432.863
3rd Qu.
566
Max.
1677
Std. dev
299.899
Skewness
1.485
Kurtosis
1.991
Outliers
120 low · 12 high
lengthScores
numeric
447
0
-219.852 – 2.8266mean -10.73
Min.
-219.852
1st Qu.
-12.3286
Median
-8.72
Mean
-10.7253
3rd Qu.
-3.5492
Max.
2.8266
Std. dev
21.0552
Skewness
-6.652
Kurtosis
50.89
Outliers
1616 low · 0 high
Fluoride_Riboswitch-RF01734
list
5
0
nested·12 rows nested·9 cols
Element length
0 – 285
Total length
561
Nesting depth
3
Nested rows
12
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
9 – 9
Total length
81
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
196
0
48 – 1767mean 265.7
Min.
48
1st Qu.
136
Median
204
Mean
265.691
3rd Qu.
309.75
Max.
1767
Std. dev
218.379
Skewness
2.956
Kurtosis
12.3
Outliers
170 low · 17 high
lengthScores
numeric
285
0
-213.308 – 2.7631mean -9.939
Min.
-213.308
1st Qu.
-11.3106
Median
-7.9485
Mean
-9.9388
3rd Qu.
-3.134
Max.
2.7631
Std. dev
20.5849
Skewness
-6.849
Kurtosis
53.84
Outliers
1010 low · 0 high
FMN_Riboswitch-RF00050
list
5
0
nested·18 rows nested·9 cols
Element length
0 – 615
Total length
891
Nesting depth
3
Nested rows
18
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
12 – 12
Total length
108
Nesting depth
2
hairpins
list
11
0
nested
Element length
6 – 6
Total length
66
Nesting depth
2
kmers
integer
222
0
58 – 2420mean 557.1
Min.
58
1st Qu.
234
Median
391.5
Mean
557.148
3rd Qu.
753.5
Max.
2420
Std. dev
434.898
Skewness
1.543
Kurtosis
2.566
Outliers
100 low · 10 high
lengthScores
numeric
615
0
-12.9717 – 2.571mean -6.176
Min.
-12.9717
1st Qu.
-10.3178
Median
-6.9455
Mean
-6.176
3rd Qu.
-2.3329
Max.
2.571
Std. dev
4.7139
Skewness
0.3608
Kurtosis
-1.114
Glycine_Riboswitch-RF00504
list
5
0
nested·13 rows nested·9 cols
Element length
0 – 375
Total length
651
Nesting depth
3
Nested rows
13
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
10 – 10
Total length
90
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
215
0
31 – 1680mean 382.2
Min.
31
1st Qu.
165.75
Median
251.5
Mean
382.18
3rd Qu.
465.25
Max.
1680
Std. dev
336.755
Skewness
1.798
Kurtosis
2.705
Outliers
230 low · 23 high
lengthScores
numeric
375
0
-37.2102 – 2.7353mean -8.194
Min.
-37.2102
1st Qu.
-12.3978
Median
-8.5519
Mean
-8.194
3rd Qu.
-3.2502
Max.
2.7353
Std. dev
6.8148
Skewness
-0.8789
Kurtosis
2.275
Outliers
99 low · 0 high
HEARO-RF02033
list
5
0
nested·20 rows nested·9 cols
Element length
0 – 427
Total length
703
Nesting depth
3
Nested rows
20
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
17 – 17
Total length
153
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
206
0
90 – 1195mean 461.4
Min.
90
1st Qu.
300
Median
407
Mean
461.43
3rd Qu.
581.75
Max.
1195
Std. dev
215.619
Skewness
0.9654
Kurtosis
0.5393
Outliers
60 low · 6 high
lengthScores
numeric
427
0
-214.671 – 2.4846mean -10.51
Min.
-214.671
1st Qu.
-9.4754
Median
-6.2704
Mean
-10.5149
3rd Qu.
-1.9185
Max.
2.4846
Std. dev
25.7559
Skewness
-5.364
Kurtosis
31.17
Outliers
2525 low · 0 high
Flavo_1-RF01705
list
5
0
nested·10 rows nested·9 cols
Element length
0 – 318
Total length
594
Nesting depth
3
Nested rows
10
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
8 – 8
Total length
72
Nesting depth
2
hairpins
list
11
0
nested
Element length
2 – 2
Total length
22
Nesting depth
2
kmers
integer
196
0
30 – 3411mean 352.2
Min.
30
1st Qu.
123
Median
215.5
Mean
352.242
3rd Qu.
431.5
Max.
3411
Std. dev
398.048
Skewness
3.787
Kurtosis
21.48
Outliers
190 low · 19 high
lengthScores
numeric
318
0
-215.233 – 2.3133mean -7.546
Min.
-215.233
1st Qu.
-6.8718
Median
-4.4778
Mean
-7.5462
3rd Qu.
-1.1399
Max.
2.3133
Std. dev
21.7269
Skewness
-6.598
Kurtosis
48.59
Outliers
1616 low · 0 high
Acido_Lenti_1-RF01687
list
5
0
nested·8 rows nested·9 cols
Element length
0 – 98
Total length
182
Nesting depth
3
Nested rows
8
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
6 – 6
Total length
54
Nesting depth
2
hairpins
list
11
0
nested
Element length
2 – 2
Total length
22
Nesting depth
2
kmers
integer
62
0
124 – 2159mean 692.3
Min.
124
1st Qu.
376.5
Median
530
Mean
692.297
3rd Qu.
854.25
Max.
2159
Std. dev
496.301
Skewness
1.527
Kurtosis
2.054
Outliers
40 low · 4 high
lengthScores
numeric
98
0
-88.1486 – 4.0085mean -49.41
Min.
-88.1486
1st Qu.
-72.435
Median
-53.0136
Mean
-49.4066
3rd Qu.
-28.7955
Max.
4.0085
Std. dev
26.795
Skewness
0.3739
Kurtosis
-1.05
5'_ureB-RF02514
list
5
0
nested·11 rows nested·9 cols
Element length
0 – 396
Total length
672
Nesting depth
3
Nested rows
11
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
10 – 10
Total length
90
Nesting depth
2
hairpins
list
11
0
nested
Element length
1 – 1
Total length
11
Nesting depth
2
kmers
integer
233
0
35 – 2654mean 537.5
Min.
35
1st Qu.
219
Median
449.5
Mean
537.465
3rd Qu.
713.25
Max.
2654
Std. dev
424.814
Skewness
1.725
Kurtosis
4.426
Outliers
80 low · 8 high
lengthScores
numeric
396
0
-206.704 – 3.6732mean -33.27
Min.
-206.704
1st Qu.
-49.4699
Median
-34.5317
Mean
-33.2682
3rd Qu.
-16.3301
Max.
3.6732
Std. dev
22.5781
Skewness
-1.447
Kurtosis
9.557
Outliers
33 low · 0 high

The nested tables do not share one set of columns, so there is no single schema to show.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-07-3046 elementsUnchangedrda · xz
version 3 · 396 KB
exact
3.222025-10-2946 elementsUnchangedrda · xz
version 3 · 396 KB
exact
3.212025-04-1546 elementsUnchangedrda · xz
version 3 · 396 KB
exact
3.202024-10-2946 elementsUnchangedrda · xz
version 3 · 396 KB
exact
3.192024-04-3046 elementsUnchangedrda · xz
version 3 · 396 KB
exact
3.182023-10-2446 elementsUnchangedrda · xz
version 3 · 396 KB
exact
3.172023-04-2546 elementsUnchangedrda · xz
version 3 · 396 KB
exact
3.162022-11-0146 elementsUnchangedrda · xz
version 3 · 396 KB
exact
3.152022-04-2646 elementsUnchangedrda · xz
version 3 · 396 KB
exact
3.142021-10-2646 elementsUnchangedrda · xz
version 3 · 396 KB
exact
3.132021-05-1946 elements–rda · xz
version 3 · 396 KB
exact

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