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TrainingSet_16S

Training Set for Classification of 16S rRNA Gene Sequences

Bundled with DECIPHER · exported, loads via data()

Class
Taxa
Taxa/Train
Elements
15
Missing
0
Format
rda · xz
version 2 · 3.6 MB
File
data/TrainingSet_16S.RData
Fingerprint
9a0ed57d
Format documented
Yes
Source
Derived from version 16 of the RDP Training Set based on Bergey's Manual (Whitman *et al.*, 2012).
About this object

The output of caret's train(). Holds the tuning grid, resampled performance, winning parameters, and the final fitted model. R object catalogue

Structure
Distinct
15
Nesting depth
3
Element length
1 – 65,536
Total length
99,289
Nested rows
8
Nested columns
3
Elements
Element
Type
Distinct
Missing
Summary
taxonomy
character
3,200
0
5 – 149 characters
taxa
character
3,199
0
3 – 38 characters
ranks
character
9
0
5 – 8 characters
levels
integer
9
0
1 – 9mean 6.768
Min.
1
1st Qu.
7
Median
7
Mean
6.7684
3rd Qu.
7
Max.
9
Std. dev
1.2162
Skewness
-0.7193
Kurtosis
1.674
children
list
729
0
integer
Element class
integer
Element length
0 – 125
Total length
3,199
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
integer
2
0
2 – 58mean 30
Min.
2
1st Qu.
16
Median
30
Mean
30
3rd Qu.
44
Max.
58
Std. dev
39.598
Order
ascending
[[2]]
integer
49
0
3 – 3188mean 1142
Min.
3
1st Qu.
136
Median
731
Mean
1141.73
3rd Qu.
1966
Max.
3188
Std. dev
1126.73
Skewness
0.7169
Kurtosis
-0.996
Order
ascending
[[3]]
integer
7
0
4 – 1866mean 497
Min.
4
1st Qu.
10
Median
161
Mean
497
3rd Qu.
714
Max.
1866
Std. dev
710.614
Skewness
0.9347
Kurtosis
-0.8749
Outliers
10 low · 1 high
Order
ascending
[[4]]
integer
12
0
5 – 1957mean 755.2
Min.
5
1st Qu.
234.25
Median
694.5
Mean
755.167
3rd Qu.
1179.25
Max.
1957
Std. dev
601.553
Skewness
0.397
Kurtosis
-1.085
Order
ascending
[[5]]
integer
6
0
6 – 1846mean 410.5
Min.
6
1st Qu.
69.25
Median
180
Mean
410.5
3rd Qu.
209
Max.
1846
Std. dev
708.489
Skewness
1.315
Kurtosis
-0.1555
Outliers
10 low · 1 high
Order
ascending
[[6]]
integer
16
0
7 – 2618mean 1347
Min.
7
1st Qu.
850.75
Median
1224
Mean
1347.31
3rd Qu.
1802.75
Max.
2618
Std. dev
765.879
Skewness
0.119
Kurtosis
-1.202
Order
ascending
[[7]]
integer
0
0
0 values
[[8]]
integer
14
0
9 – 2098mean 748.4
Min.
9
1st Qu.
167
Median
648.5
Mean
748.357
3rd Qu.
1260.5
Max.
2098
Std. dev
694.641
Skewness
0.4287
Kurtosis
-1.328
Order
ascending
[[9]]
integer
1
0
10
[[10]]
integer
123
0
11 – 3172mean 1987
Min.
11
1st Qu.
1298
Median
2057
Mean
1986.85
3rd Qu.
2747
Max.
3172
Std. dev
814.743
Skewness
-0.4317
Kurtosis
-0.9951
Order
ascending
[[11]]
integer
0
0
0 values
[[12]]
integer
18
0
13 – 1281mean 431.5
Min.
13
1st Qu.
108.25
Median
276.5
Mean
431.5
3rd Qu.
723.75
Max.
1281
Std. dev
405.352
Skewness
0.7839
Kurtosis
-0.8114
Order
ascending
[[13]]
integer
5
0
14 – 1113mean 513.4
Min.
14
1st Qu.
24
Median
322
Mean
513.4
3rd Qu.
1094
Max.
1113
Std. dev
552.758
Skewness
0.1924
Kurtosis
-2.221
Order
ascending
[[14]]
integer
19
0
15 – 3116mean 1833
Min.
15
1st Qu.
1205
Median
1864
Mean
1833.26
3rd Qu.
2535.5
Max.
3116
Std. dev
958.695
Skewness
-0.3906
Kurtosis
-1.192
Order
ascending
[[15]]
integer
0
0
0 values
[[16]]
integer
15
0
17 – 2881mean 700.7
Min.
17
1st Qu.
292.5
Median
538
Mean
700.733
3rd Qu.
813
Max.
2881
Std. dev
703.881
Skewness
1.913
Kurtosis
3.304
Outliers
10 low · 1 high
Order
ascending
[[17]]
integer
11
0
18 – 2837mean 1903
Min.
18
1st Qu.
1469.5
Median
2078
Mean
1902.82
3rd Qu.
2518
Max.
2837
Std. dev
882.7
Skewness
-0.8257
Kurtosis
-0.6643
Order
ascending
[[18]]
integer
0
0
0 values
[[19]]
integer
5
0
20 – 3006mean 1701
Min.
20
1st Qu.
298
Median
2573
Mean
1701
3rd Qu.
2608
Max.
3006
Std. dev
1421.29
Skewness
-0.2703
Kurtosis
-2.215
Order
ascending
[[20]]
integer
2
0
21 – 1779mean 900
Min.
21
1st Qu.
460.5
Median
900
Mean
900
3rd Qu.
1339.5
Max.
1779
Std. dev
1243.09
Order
ascending
[[21]]
integer
1
0
22
[[22]]
integer
4
0
23 – 1718mean 808.5
Min.
23
1st Qu.
503
Median
746.5
Mean
808.5
3rd Qu.
1052
Max.
1718
Std. dev
699.007
Skewness
0.1937
Kurtosis
-1.884
Order
ascending
[[23]]
integer
0
0
0 values
[[24]]
integer
4
0
25 – 2239mean 922.2
Min.
25
1st Qu.
261.25
Median
712.5
Mean
922.25
3rd Qu.
1373.5
Max.
2239
Std. dev
983.936
Skewness
0.3589
Kurtosis
-1.994
Order
ascending
[[25]]
integer
0
0
0 values
[[26]]
integer
4
0
27 – 2517mean 957.5
Min.
27
1st Qu.
285.75
Median
643
Mean
957.5
3rd Qu.
1314.75
Max.
2517
Std. dev
1101.9
Skewness
0.5206
Kurtosis
-1.85
Order
ascending
[[27]]
integer
33
0
28 – 3193mean 1664
Min.
28
1st Qu.
889
Median
1670
Mean
1664.09
3rd Qu.
2467
Max.
3193
Std. dev
968.995
Skewness
-0.0412
Kurtosis
-1.238
Order
ascending
[[28]]
integer
0
0
0 values
[[29]]
integer
11
0
30 – 2738mean 1280
Min.
30
1st Qu.
569.5
Median
1335
Mean
1280.36
3rd Qu.
1828
Max.
2738
Std. dev
890.346
Skewness
0.1466
Kurtosis
-1.442
Order
ascending
[[30]]
integer
18
0
31 – 3119mean 1284
Min.
31
1st Qu.
714
Median
1113
Mean
1283.78
3rd Qu.
1731.75
Max.
3119
Std. dev
808.819
Skewness
0.5945
Kurtosis
-0.5264
Order
ascending
[[31]]
integer
0
0
0 values
[[32]]
integer
1
0
33
[[33]]
integer
0
0
0 values
[[34]]
integer
15
0
35 – 3048mean 1954
Min.
35
1st Qu.
1454
Median
2079
Mean
1953.8
3rd Qu.
2669
Max.
3048
Std. dev
863.317
Skewness
-0.5
Kurtosis
-0.6676
Order
ascending
[[35]]
integer
0
0
0 values
[[36]]
integer
1
0
37
[[37]]
integer
0
0
0 values
[[38]]
integer
3
0
39 – 2514mean 940.3
Min.
39
1st Qu.
153.5
Median
268
Mean
940.333
3rd Qu.
1391
Max.
2514
Std. dev
1367.64
Skewness
0.3728
Kurtosis
-2.333
Order
ascending
[[39]]
integer
28
0
40 – 3161mean 1741
Min.
40
1st Qu.
1284.5
Median
1809.5
Mean
1740.68
3rd Qu.
2244.25
Max.
3161
Std. dev
832.169
Skewness
-0.2312
Kurtosis
-0.5815
Order
ascending
[[40]]
integer
0
0
0 values
[[41]]
integer
2
0
42 – 2083mean 1062
Min.
42
1st Qu.
552.25
Median
1062.5
Mean
1062.5
3rd Qu.
1572.75
Max.
2083
Std. dev
1443.2
Order
ascending
[[42]]
integer
5
0
43 – 1758mean 768.8
Min.
43
1st Qu.
204
Median
868
Mean
768.8
3rd Qu.
971
Max.
1758
Std. dev
684.658
Skewness
0.2584
Kurtosis
-1.782
Order
ascending
[[43]]
integer
2
0
44 – 683mean 363.5
Min.
44
1st Qu.
203.75
Median
363.5
Mean
363.5
3rd Qu.
523.25
Max.
683
Std. dev
451.841
Order
ascending
[[44]]
integer
14
0
45 – 2002mean 519.5
Min.
45
1st Qu.
174.75
Median
306
Mean
519.5
3rd Qu.
599.25
Max.
2002
Std. dev
531.3
Skewness
1.512
Kurtosis
1.614
Outliers
10 low · 1 high
Order
ascending
[[45]]
integer
7
0
46 – 2847mean 1377
Min.
46
1st Qu.
714
Median
1290
Mean
1376.57
3rd Qu.
2012.5
Max.
2847
Std. dev
1039.34
Skewness
-0.0219
Kurtosis
-1.657
Order
ascending
[[46]]
integer
3
0
47 – 3158mean 1374
Min.
47
1st Qu.
481.5
Median
916
Mean
1373.67
3rd Qu.
2037
Max.
3158
Std. dev
1605.2
Skewness
0.2619
Kurtosis
-2.333
Order
ascending
[[47]]
integer
0
0
0 values
[[48]]
integer
1
0
49
[[49]]
integer
0
0
0 values
[[50]]
integer
1
0
51
parents
numeric
729
0
0 – 3199mean 500.9
Min.
0
1st Qu.
84
Median
255
Mean
500.872
3rd Qu.
625
Max.
3199
Std. dev
648.208
Skewness
2.185
Kurtosis
4.792
Zeros
1
Outliers
2800 low · 280 high
fraction
numeric
6
5
0.0102 – 0.06mean 0.0599
Min.
0.0102
1st Qu.
0.06
Median
0.06
Mean
0.0599
3rd Qu.
0.06
Max.
0.06
Std. dev
0.0015
Skewness
-27.99
Kurtosis
812.8
sequences
list
2,832
0
integer
Element class
integer
Element length
1 – 2,472
Total length
17,714
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
integer
2,472
0
1 – 2472mean 1236
Min.
1
1st Qu.
618.75
Median
1236.5
Mean
1236.5
3rd Qu.
1854.25
Max.
2472
Std. dev
713.749
Skewness
-1.689e-17
Kurtosis
-1.202
Order
ascending
[[2]]
integer
2,337
0
1 – 2472mean 1234
Min.
1
1st Qu.
620
Median
1233
Mean
1234.24
3rd Qu.
1853
Max.
2472
Std. dev
711.931
Skewness
-0.0007
Kurtosis
-1.202
Order
ascending
[[3]]
integer
1,004
0
1 – 2467mean 1220
Min.
1
1st Qu.
632.75
Median
1222.5
Mean
1219.81
3rd Qu.
1806.5
Max.
2467
Std. dev
694.162
Skewness
-0.0115
Kurtosis
-1.154
Order
ascending
[[4]]
integer
167
0
1 – 2466mean 1138
Min.
1
1st Qu.
495
Median
1123
Mean
1138.35
3rd Qu.
1695.5
Max.
2466
Std. dev
701.392
Skewness
0.0797
Kurtosis
-1.185
Order
ascending
[[5]]
integer
96
0
1 – 2466mean 1170
Min.
1
1st Qu.
527.5
Median
1158
Mean
1169.94
3rd Qu.
1682
Max.
2466
Std. dev
687.571
Skewness
-0.0033
Kurtosis
-1.155
Order
ascending
[[6]]
integer
16
0
1 – 1964mean 895.6
Min.
1
1st Qu.
471.25
Median
758
Mean
895.625
3rd Qu.
1230.75
Max.
1964
Std. dev
604.296
Skewness
0.3545
Kurtosis
-1.28
Order
ascending
[[7]]
integer
1
0
1
[[8]]
integer
357
0
2 – 2467mean 1308
Min.
2
1st Qu.
680
Median
1329
Mean
1308.49
3rd Qu.
1937
Max.
2467
Std. dev
711.124
Skewness
-0.1318
Kurtosis
-1.249
Order
ascending
[[9]]
integer
123
0
2 – 2452mean 1427
Min.
2
1st Qu.
819
Median
1455
Mean
1427.37
3rd Qu.
2089
Max.
2452
Std. dev
687.391
Skewness
-0.2888
Kurtosis
-1.218
Order
ascending
[[10]]
integer
123
0
2 – 2452mean 1427
Min.
2
1st Qu.
819
Median
1455
Mean
1427.37
3rd Qu.
2089
Max.
2452
Std. dev
687.391
Skewness
-0.2888
Kurtosis
-1.218
Order
ascending
[[11]]
integer
1
0
2
[[12]]
integer
358
0
3 – 2456mean 1150
Min.
3
1st Qu.
574
Median
1120.5
Mean
1149.63
3rd Qu.
1748.75
Max.
2456
Std. dev
698.588
Skewness
0.0992
Kurtosis
-1.143
Order
ascending
[[13]]
integer
50
0
3 – 2405mean 1130
Min.
3
1st Qu.
598.75
Median
1161
Mean
1129.76
3rd Qu.
1709
Max.
2405
Std. dev
681.742
Skewness
-0.0377
Kurtosis
-1.173
Order
ascending
[[14]]
integer
19
0
3 – 2405mean 1311
Min.
3
1st Qu.
743
Median
1279
Mean
1311
3rd Qu.
1885.5
Max.
2405
Std. dev
777.807
Skewness
-0.2184
Kurtosis
-1.373
Order
ascending
[[15]]
integer
1
0
3
[[16]]
integer
101
0
4 – 2403mean 1345
Min.
4
1st Qu.
780
Median
1412
Mean
1345.32
3rd Qu.
1930
Max.
2403
Std. dev
694.42
Skewness
-0.2387
Kurtosis
-1.171
Order
ascending
[[17]]
integer
11
0
4 – 2173mean 1368
Min.
4
1st Qu.
960.5
Median
1472
Mean
1368.45
3rd Qu.
1868.5
Max.
2173
Std. dev
701.131
Skewness
-0.6188
Kurtosis
-1.094
Order
ascending
[[18]]
integer
1
0
4
[[19]]
integer
22
0
5 – 2386mean 1238
Min.
5
1st Qu.
591.75
Median
1293
Mean
1238.27
3rd Qu.
1832
Max.
2386
Std. dev
752.839
Skewness
0.0097
Kurtosis
-1.28
Order
ascending
[[20]]
integer
6
0
5 – 1248mean 735.7
Min.
5
1st Qu.
371.5
Median
805
Mean
735.667
3rd Qu.
1194.25
Max.
1248
Std. dev
534.403
Skewness
-0.1737
Kurtosis
-2.051
Order
ascending
[[21]]
integer
4
0
5 – 1156mean 489.8
Min.
5
1st Qu.
259.25
Median
399
Mean
489.75
3rd Qu.
629.5
Max.
1156
Std. dev
483.526
Skewness
0.3952
Kurtosis
-1.844
Order
ascending
[[22]]
integer
4
0
5 – 1156mean 489.8
Min.
5
1st Qu.
259.25
Median
399
Mean
489.75
3rd Qu.
629.5
Max.
1156
Std. dev
483.526
Skewness
0.3952
Kurtosis
-1.844
Order
ascending
[[23]]
integer
1
0
5
[[24]]
integer
4
0
6 – 1620mean 605.2
Min.
6
1st Qu.
109.5
Median
397.5
Mean
605.25
3rd Qu.
893.25
Max.
1620
Std. dev
731.132
Skewness
0.468
Kurtosis
-1.92
Order
ascending
[[25]]
integer
1
0
6
[[26]]
integer
72
0
7 – 2467mean 1169
Min.
7
1st Qu.
513.75
Median
1116.5
Mean
1168.6
3rd Qu.
1834.75
Max.
2467
Std. dev
725.444
Skewness
0.1538
Kurtosis
-1.234
Order
ascending
[[27]]
integer
33
0
7 – 2467mean 1171
Min.
7
1st Qu.
498
Median
1113
Mean
1170.73
3rd Qu.
1821
Max.
2467
Std. dev
785.368
Skewness
0.1423
Kurtosis
-1.299
Order
ascending
[[28]]
integer
1
0
7
[[29]]
integer
40
0
8 – 2407mean 1037
Min.
8
1st Qu.
509.5
Median
961
Mean
1036.95
3rd Qu.
1535
Max.
2407
Std. dev
646.974
Skewness
0.2718
Kurtosis
-1.112
Order
ascending
[[30]]
integer
18
0
8 – 2407mean 846.9
Min.
8
1st Qu.
379.75
Median
673
Mean
846.944
3rd Qu.
1167.25
Max.
2407
Std. dev
647.067
Skewness
0.8406
Kurtosis
-0.2503
Outliers
10 low · 1 high
Order
ascending
[[31]]
integer
1
0
8
[[32]]
integer
1
0
9
[[33]]
integer
1
0
9
[[34]]
integer
15
0
10 – 2352mean 1404
Min.
10
1st Qu.
937.5
Median
1473
Mean
1404.13
3rd Qu.
2013
Max.
2352
Std. dev
709.253
Skewness
-0.2381
Kurtosis
-1.131
Order
ascending
[[35]]
integer
1
0
10
[[36]]
integer
1
0
11
[[37]]
integer
1
0
11
[[38]]
integer
37
0
12 – 2443mean 1203
Min.
12
1st Qu.
648
Median
1235
Mean
1202.76
3rd Qu.
1855
Max.
2443
Std. dev
720.915
Skewness
-0.0852
Kurtosis
-1.145
Order
ascending
[[39]]
integer
28
0
12 – 2443mean 1219
Min.
12
1st Qu.
803.75
Median
1232.5
Mean
1219.04
3rd Qu.
1621.75
Max.
2443
Std. dev
674.392
Skewness
0.0557
Kurtosis
-0.791
Order
ascending
[[40]]
integer
1
0
12
[[41]]
integer
335
0
13 – 2472mean 1220
Min.
13
1st Qu.
595.5
Median
1216
Mean
1220.08
3rd Qu.
1823.5
Max.
2472
Std. dev
702.962
Skewness
0.0827
Kurtosis
-1.199
Order
ascending
[[42]]
integer
334
0
13 – 2472mean 1219
Min.
13
1st Qu.
590.75
Median
1213.5
Mean
1219.31
3rd Qu.
1824.25
Max.
2472
Std. dev
703.876
Skewness
0.0857
Kurtosis
-1.202
Order
ascending
[[43]]
integer
305
0
13 – 2469mean 1212
Min.
13
1st Qu.
571
Median
1216
Mean
1211.72
3rd Qu.
1837
Max.
2469
Std. dev
709.591
Skewness
0.0902
Kurtosis
-1.223
Order
ascending
[[44]]
integer
297
0
13 – 2469mean 1210
Min.
13
1st Qu.
584
Median
1216
Mean
1210.48
3rd Qu.
1825
Max.
2469
Std. dev
709.236
Skewness
0.0905
Kurtosis
-1.216
Order
ascending
[[45]]
integer
16
0
13 – 2440mean 1197
Min.
13
1st Qu.
737
Median
1253.5
Mean
1197.06
3rd Qu.
1634.5
Max.
2440
Std. dev
787.029
Skewness
-0.0018
Kurtosis
-1.175
Order
ascending
[[46]]
integer
3
0
13 – 2440mean 991.3
Min.
13
1st Qu.
267
Median
521
Mean
991.333
3rd Qu.
1480.5
Max.
2440
Std. dev
1280.04
Skewness
0.3178
Kurtosis
-2.333
Order
ascending
[[47]]
integer
1
0
13
[[48]]
integer
1
0
14
[[49]]
integer
1
0
14
[[50]]
integer
1
0
15
kmers
list
2,472
0
integer
Element class
integer
Element length
477 – 1,689
Total length
3,494,902
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
integer
1,426
0
39 – 65383mean 3.192e+4
Min.
39
1st Qu.
16820.2
Median
33433
Mean
31922.7
3rd Qu.
45611.8
Max.
65383
Std. dev
18007.9
Skewness
-0.0479
Kurtosis
-1.105
Order
ascending
[[2]]
integer
1,372
0
54 – 65447mean 3.248e+4
Min.
54
1st Qu.
16819.5
Median
33824.5
Mean
32477.6
3rd Qu.
46471.5
Max.
65447
Std. dev
18238.2
Skewness
-0.0398
Kurtosis
-1.126
Order
ascending
[[3]]
integer
1,329
0
30 – 65212mean 3.22e+4
Min.
30
1st Qu.
16437
Median
34154
Mean
32201.9
3rd Qu.
46284
Max.
65212
Std. dev
18218.1
Skewness
-0.0861
Kurtosis
-1.141
Order
ascending
[[4]]
integer
1,377
0
6 – 65456mean 3.271e+4
Min.
6
1st Qu.
16793
Median
34239
Mean
32706.1
3rd Qu.
47232
Max.
65456
Std. dev
18330
Skewness
-0.0604
Kurtosis
-1.14
Order
ascending
[[5]]
integer
1,465
0
219 – 65446mean 3.237e+4
Min.
219
1st Qu.
15969
Median
33631
Mean
32373
3rd Qu.
47155
Max.
65446
Std. dev
18494.5
Skewness
-0.0332
Kurtosis
-1.173
Order
ascending
[[6]]
integer
1,457
0
303 – 65351mean 3.232e+4
Min.
303
1st Qu.
16303
Median
34026
Mean
32317.4
3rd Qu.
47200
Max.
65351
Std. dev
18407.4
Skewness
-0.0693
Kurtosis
-1.173
Order
ascending
[[7]]
integer
1,385
0
222 – 65223mean 3.293e+4
Min.
222
1st Qu.
17505
Median
34682
Mean
32933.5
3rd Qu.
46825
Max.
65223
Std. dev
18100.8
Skewness
-0.0993
Kurtosis
-1.125
Order
ascending
[[8]]
integer
1,453
0
109 – 65264mean 3.225e+4
Min.
109
1st Qu.
15740
Median
33771
Mean
32250
3rd Qu.
47378
Max.
65264
Std. dev
18732.7
Skewness
-0.0288
Kurtosis
-1.198
Order
ascending
[[9]]
integer
1,471
0
243 – 65487mean 3.216e+4
Min.
243
1st Qu.
15034
Median
33517
Mean
32155.6
3rd Qu.
47588
Max.
65487
Std. dev
18789.2
Skewness
-0.0247
Kurtosis
-1.21
Order
ascending
[[10]]
integer
1,434
0
39 – 65450mean 3.187e+4
Min.
39
1st Qu.
15330
Median
33403.5
Mean
31867.6
3rd Qu.
46469.5
Max.
65450
Std. dev
18452.3
Skewness
-0.0305
Kurtosis
-1.188
Order
ascending
[[11]]
integer
1,443
0
99 – 65444mean 3.174e+4
Min.
99
1st Qu.
16158
Median
33202
Mean
31740
3rd Qu.
45118.5
Max.
65444
Std. dev
18092
Skewness
0.0029
Kurtosis
-1.107
Order
ascending
[[12]]
integer
1,472
0
131 – 65351mean 3.174e+4
Min.
131
1st Qu.
16042.5
Median
33369
Mean
31743
3rd Qu.
45666
Max.
65351
Std. dev
18087.1
Skewness
-0.0361
Kurtosis
-1.138
Order
ascending
[[13]]
integer
1,302
0
188 – 65211mean 3.35e+4
Min.
188
1st Qu.
19120.5
Median
35496
Mean
33501.7
3rd Qu.
46637.8
Max.
65211
Std. dev
17619.2
Skewness
-0.1421
Kurtosis
-1.053
Order
ascending
[[14]]
integer
1,463
0
465 – 65212mean 3.235e+4
Min.
465
1st Qu.
18886.5
Median
33839
Mean
32354.3
3rd Qu.
44760
Max.
65212
Std. dev
17334.6
Skewness
-0.0897
Kurtosis
-1.018
Order
ascending
[[15]]
integer
1,423
0
219 – 65504mean 3.206e+4
Min.
219
1st Qu.
15613
Median
33419
Mean
32059.1
3rd Qu.
46741.5
Max.
65504
Std. dev
18429.3
Skewness
-0.0351
Kurtosis
-1.167
Order
ascending
[[16]]
integer
1,394
0
22 – 65523mean 3.242e+4
Min.
22
1st Qu.
16863
Median
34236.5
Mean
32417.2
3rd Qu.
46408.5
Max.
65523
Std. dev
18169.6
Skewness
-0.0795
Kurtosis
-1.12
Order
ascending
[[17]]
integer
1,432
0
39 – 65447mean 3.236e+4
Min.
39
1st Qu.
16792.2
Median
34217
Mean
32363.8
3rd Qu.
46357.5
Max.
65447
Std. dev
18260.3
Skewness
-0.0641
Kurtosis
-1.136
Order
ascending
[[18]]
integer
1,226
0
154 – 65387mean 3.154e+4
Min.
154
1st Qu.
20733.8
Median
33092.5
Mean
31535.6
3rd Qu.
43364
Max.
65387
Std. dev
16076.6
Skewness
-0.0801
Kurtosis
-0.8583
Order
ascending
[[19]]
integer
1,389
0
33 – 65390mean 3.195e+4
Min.
33
1st Qu.
16052
Median
33254
Mean
31951.8
3rd Qu.
46167
Max.
65390
Std. dev
18170.7
Skewness
-0.0122
Kurtosis
-1.145
Order
ascending
[[20]]
integer
1,484
0
149 – 65520mean 3.217e+4
Min.
149
1st Qu.
15701.5
Median
33384.5
Mean
32171.9
3rd Qu.
47377.2
Max.
65520
Std. dev
18854.7
Skewness
-0.0094
Kurtosis
-1.179
Order
ascending
[[21]]
integer
1,430
0
147 – 65475mean 3.219e+4
Min.
147
1st Qu.
17296.8
Median
33844.5
Mean
32192.7
3rd Qu.
45611.8
Max.
65475
Std. dev
17737.8
Skewness
-0.0748
Kurtosis
-1.09
Order
ascending
[[22]]
integer
1,433
0
30 – 65441mean 3.148e+4
Min.
30
1st Qu.
14906
Median
33108
Mean
31476
3rd Qu.
46378
Max.
65441
Std. dev
18679.1
Skewness
0.0135
Kurtosis
-1.189
Order
ascending
[[23]]
integer
1,419
0
210 – 65456mean 3.222e+4
Min.
210
1st Qu.
17451.5
Median
33493
Mean
32217.4
3rd Qu.
45468
Max.
65456
Std. dev
17758.2
Skewness
-0.0629
Kurtosis
-1.081
Order
ascending
[[24]]
integer
901
0
22 – 65499mean 3.19e+4
Min.
22
1st Qu.
16823
Median
33381
Mean
31900.8
3rd Qu.
45499
Max.
65499
Std. dev
17983.8
Skewness
-0.0424
Kurtosis
-1.087
Order
ascending
[[25]]
integer
1,394
0
15 – 65406mean 3.145e+4
Min.
15
1st Qu.
14848.5
Median
32873.5
Mean
31447
3rd Qu.
46785.8
Max.
65406
Std. dev
18711.4
Skewness
0.0206
Kurtosis
-1.202
Order
ascending
[[26]]
integer
1,437
0
59 – 65460mean 3.2e+4
Min.
59
1st Qu.
15359
Median
33170
Mean
31997.1
3rd Qu.
47126
Max.
65460
Std. dev
18657.3
Skewness
-0.0231
Kurtosis
-1.181
Order
ascending
[[27]]
integer
1,432
0
234 – 65387mean 3.205e+4
Min.
234
1st Qu.
15039
Median
33382.5
Mean
32046.6
3rd Qu.
47435.2
Max.
65387
Std. dev
18823.8
Skewness
-0.0295
Kurtosis
-1.205
Order
ascending
[[28]]
integer
1,496
0
70 – 65441mean 3.202e+4
Min.
70
1st Qu.
15528
Median
33658
Mean
32022.4
3rd Qu.
46511.5
Max.
65441
Std. dev
18345.1
Skewness
-0.0332
Kurtosis
-1.171
Order
ascending
[[29]]
integer
1,455
0
96 – 65382mean 3.188e+4
Min.
96
1st Qu.
16569.5
Median
33170
Mean
31879
3rd Qu.
46355.5
Max.
65382
Std. dev
18043.8
Skewness
-0.0245
Kurtosis
-1.116
Order
ascending
[[30]]
integer
1,372
0
42 – 65291mean 3.174e+4
Min.
42
1st Qu.
16019.2
Median
33232
Mean
31738.8
3rd Qu.
46161.5
Max.
65291
Std. dev
18259
Skewness
-0.0669
Kurtosis
-1.153
Order
ascending
[[31]]
integer
1,409
0
112 – 65212mean 3.227e+4
Min.
112
1st Qu.
15771
Median
34159
Mean
32275
3rd Qu.
47110
Max.
65212
Std. dev
18476.7
Skewness
-0.0508
Kurtosis
-1.18
Order
ascending
[[32]]
integer
1,351
0
54 – 65379mean 3.21e+4
Min.
54
1st Qu.
17381
Median
33547
Mean
32102.7
3rd Qu.
45020
Max.
65379
Std. dev
17585.2
Skewness
-0.045
Kurtosis
-1.064
Order
ascending
[[33]]
integer
1,397
0
253 – 65390mean 3.207e+4
Min.
253
1st Qu.
15522
Median
33417
Mean
32071.6
3rd Qu.
47202
Max.
65390
Std. dev
18463.5
Skewness
-0.0228
Kurtosis
-1.193
Order
ascending
[[34]]
integer
1,423
0
395 – 65515mean 3.184e+4
Min.
395
1st Qu.
18095
Median
33094
Mean
31840.7
3rd Qu.
43929.5
Max.
65515
Std. dev
17240.6
Skewness
-0.0583
Kurtosis
-0.9934
Order
ascending
[[35]]
integer
1,493
0
6 – 65441mean 3.138e+4
Min.
6
1st Qu.
14526
Median
32956
Mean
31380.2
3rd Qu.
46788
Max.
65441
Std. dev
18981.7
Skewness
0.0152
Kurtosis
-1.214
Order
ascending
[[36]]
integer
1,439
0
6 – 65351mean 3.202e+4
Min.
6
1st Qu.
17034.5
Median
33381
Mean
32019.8
3rd Qu.
45365.5
Max.
65351
Std. dev
17934.3
Skewness
-0.0634
Kurtosis
-1.089
Order
ascending
[[37]]
integer
1,451
0
259 – 65366mean 3.18e+4
Min.
259
1st Qu.
16938.5
Median
33254
Mean
31796.7
3rd Qu.
45115
Max.
65366
Std. dev
17938.2
Skewness
-0.0534
Kurtosis
-1.082
Order
ascending
[[38]]
integer
1,410
0
379 – 65492mean 3.213e+4
Min.
379
1st Qu.
15591.5
Median
33403.5
Mean
32127.3
3rd Qu.
46716
Max.
65492
Std. dev
18438.4
Skewness
-0.0103
Kurtosis
-1.155
Order
ascending
[[39]]
integer
1,435
0
243 – 65501mean 3.211e+4
Min.
243
1st Qu.
15622
Median
33515
Mean
32111.4
3rd Qu.
46701.5
Max.
65501
Std. dev
18466.2
Skewness
-0.0323
Kurtosis
-1.167
Order
ascending
[[40]]
integer
1,372
0
18 – 65390mean 3.162e+4
Min.
18
1st Qu.
14878
Median
33199.5
Mean
31616.6
3rd Qu.
47116.2
Max.
65390
Std. dev
18635.8
Skewness
-0.0017
Kurtosis
-1.216
Order
ascending
[[41]]
integer
1,397
0
42 – 65291mean 3.213e+4
Min.
42
1st Qu.
16613
Median
33483
Mean
32126.7
3rd Qu.
46070
Max.
65291
Std. dev
18163.6
Skewness
-0.0765
Kurtosis
-1.121
Order
ascending
[[42]]
integer
1,441
0
39 – 65531mean 3.479e+4
Min.
39
1st Qu.
19515
Median
37474
Mean
34788.7
3rd Qu.
48226
Max.
65531
Std. dev
18234.1
Skewness
-0.187
Kurtosis
-1.063
Order
ascending
[[43]]
integer
1,446
0
70 – 65212mean 3.195e+4
Min.
70
1st Qu.
16327.8
Median
33412
Mean
31946.2
3rd Qu.
46195.2
Max.
65212
Std. dev
18086.6
Skewness
-0.0355
Kurtosis
-1.133
Order
ascending
[[44]]
integer
1,498
0
3 – 65531mean 3.242e+4
Min.
3
1st Qu.
14893.2
Median
33970.5
Mean
32423.6
3rd Qu.
48030
Max.
65531
Std. dev
19127
Skewness
-0.0373
Kurtosis
-1.244
Order
ascending
[[45]]
integer
1,382
0
175 – 65317mean 3.454e+4
Min.
175
1st Qu.
19506
Median
36996
Mean
34541.6
3rd Qu.
47853.2
Max.
65317
Std. dev
17952.1
Skewness
-0.1952
Kurtosis
-1.075
Order
ascending
[[46]]
integer
1,464
0
186 – 65179mean 3.212e+4
Min.
186
1st Qu.
17367
Median
33430
Mean
32118.1
3rd Qu.
45128.8
Max.
65179
Std. dev
17724.9
Skewness
-0.0601
Kurtosis
-1.083
Order
ascending
[[47]]
integer
749
0
395 – 65475mean 3.193e+4
Min.
395
1st Qu.
17462
Median
34327
Mean
31926.7
3rd Qu.
44058
Max.
65475
Std. dev
17283.8
Skewness
-0.0928
Kurtosis
-1.032
Order
ascending
[[48]]
integer
1,442
0
298 – 65509mean 3.215e+4
Min.
298
1st Qu.
16404
Median
33399
Mean
32152.1
3rd Qu.
46556.2
Max.
65509
Std. dev
18314.8
Skewness
-0.039
Kurtosis
-1.141
Order
ascending
[[49]]
integer
1,492
0
112 – 65479mean 3.19e+4
Min.
112
1st Qu.
15746
Median
33448.5
Mean
31902
3rd Qu.
46211.2
Max.
65479
Std. dev
18313.4
Skewness
-0.0425
Kurtosis
-1.156
Order
ascending
[[50]]
integer
1,379
0
22 – 65212mean 3.223e+4
Min.
22
1st Qu.
17256.5
Median
33450
Mean
32233.8
3rd Qu.
45875
Max.
65212
Std. dev
17934.4
Skewness
-0.0633
Kurtosis
-1.104
Order
ascending
crossIndex
integer
2,472
0
7 – 3200mean 1755
Min.
7
1st Qu.
1046.75
Median
1813.5
Mean
1755.41
3rd Qu.
2502.25
Max.
3200
Std. dev
866.441
Skewness
-0.1716
Kurtosis
-1.088
Order
ascending
K
numeric
1
0
8
IDFweights
numeric
1,296
0
0.0159 – 7.8128mean 5.082
Min.
0.0159
1st Qu.
4.2864
Median
5.2478
Mean
5.082
3rd Qu.
6.021
Max.
7.8128
Std. dev
1.3746
Skewness
-0.692
Kurtosis
0.6476
Outliers
1,2971297 low · 0 high
decisionKmers
list
634
0
nested
Element length
0 – 2
Total length
1,456
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
list
2
0
nested
Element length
6,347 – 12,694
Total length
19,041
[[2]]
list
2
0
nested
Element length
5,040 – 246,960
Total length
252,000
[[3]]
list
2
0
nested
Element length
3,267 – 22,869
Total length
26,136
[[4]]
list
2
0
nested
Element length
1,147 – 13,764
Total length
14,911
[[5]]
list
2
0
nested
Element length
528 – 3,168
Total length
3,696
[[6]]
list
2
0
nested
Element length
150 – 2,400
Total length
2,550
[[8]]
list
2
0
nested
Element length
1,443 – 20,202
Total length
21,645
[[9]]
list
2
0
nested
Element length
1,067 – 1,067
Total length
2,134
[[10]]
list
2
0
nested
Element length
146 – 17,958
Total length
18,104
[[12]]
list
2
0
nested
Element length
1,110 – 19,980
Total length
21,090
[[13]]
list
2
0
nested
Element length
635 – 3,175
Total length
3,810
[[14]]
list
2
0
nested
Element length
151 – 2,869
Total length
3,020
[[16]]
list
2
0
nested
Element length
539 – 8,085
Total length
8,624
[[17]]
list
2
0
nested
Element length
146 – 1,606
Total length
1,752
[[19]]
list
2
0
nested
Element length
538 – 2,690
Total length
3,228
[[20]]
list
2
0
nested
Element length
332 – 664
Total length
996
[[21]]
list
2
0
nested
Element length
332 – 332
Total length
664
[[22]]
list
2
0
nested
Element length
147 – 588
Total length
735
[[24]]
list
2
0
nested
Element length
148 – 592
Total length
740
[[26]]
list
2
0
nested
Element length
1,051 – 4,204
Total length
5,255
[[27]]
list
2
0
nested
Element length
146 – 4,818
Total length
4,964
[[29]]
list
2
0
nested
Element length
667 – 7,337
Total length
8,004
[[30]]
list
2
0
nested
Element length
149 – 2,682
Total length
2,831
[[32]]
list
2
0
nested
Element length
148 – 148
Total length
296
[[34]]
list
2
0
nested
Element length
151 – 2,265
Total length
2,416
[[36]]
list
2
0
nested
Element length
145 – 145
Total length
290
[[38]]
list
2
0
nested
Element length
646 – 1,938
Total length
2,584
[[39]]
list
2
0
nested
Element length
152 – 4,256
Total length
4,408
[[41]]
list
2
0
nested
Element length
2,702 – 5,404
Total length
8,106
[[42]]
list
2
0
nested
Element length
2,340 – 11,700
Total length
14,040
[[43]]
list
2
0
nested
Element length
2,243 – 4,486
Total length
6,729
[[44]]
list
2
0
nested
Element length
1,279 – 17,906
Total length
19,185
[[45]]
list
2
0
nested
Element length
288 – 2,016
Total length
2,304
[[46]]
list
2
0
nested
Element length
146 – 438
Total length
584
[[48]]
list
2
0
nested
Element length
147 – 147
Total length
294
[[50]]
list
2
0
nested
Element length
143 – 143
Total length
286
problemSequences
list
3
0
nested·8 rows nested
Element length
8 – 8
Total length
24
Nested rows
8
What is inside it
Element
Type
Distinct
Missing
Summary
Index
integer
8
0
23 – 1754mean 979.2
Min.
23
1st Qu.
656
Median
1082.5
Mean
979.25
3rd Qu.
1389
Max.
1754
Std. dev
614.487
Skewness
-0.3058
Kurtosis
-1.608
Order
ascending
Expected
character
8
0
82 – 104 characters
Predicted
character
6
0
50 – 98 characters
problemGroups
character
5
0
42 – 81 characters
Every nested table has these 3 columns
  • Index
  • Expected
  • Predicted
Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-07-3015 elementsUnchangedrda · xz
version 2 · 3.6 MB
exact
3.222025-10-2915 elementsUnchangedrda · xz
version 2 · 3.6 MB
exact
3.212025-04-1515 elementsUnchangedrda · xz
version 2 · 3.6 MB
exact
3.202024-10-2915 elementsUnchangedrda · xz
version 2 · 3.6 MB
exact
3.192024-04-3015 elementsUnchangedrda · xz
version 2 · 3.6 MB
exact
3.182023-10-2415 elementsUnchangedrda · xz
version 2 · 3.6 MB
exact
3.172023-04-2515 elementsUnchangedrda · xz
version 2 · 3.6 MB
exact
3.162022-11-0115 elementsUnchangedrda · xz
version 2 · 3.6 MB
exact
3.152022-04-2615 elementsUnchangedrda · xz
version 2 · 3.6 MB
exact
3.142021-10-2615 elementsUnchangedrda · xz
version 2 · 3.6 MB
exact
3.132021-05-1915 elementsUnchangedrda · xz
version 2 · 3.6 MB
exact
3.122020-10-2815 elementsUnchangedrda · xz
version 2 · 3.6 MB
exact
3.112020-05-1115 elementsUnchangedrda · xz
version 2 · 3.6 MB
exact
3.102019-10-2915 elementsUnchangedrda · xz
version 2 · 3.6 MB
exact
3.92019-05-0215 elementsUnchangedrda · xz
version 2 · 3.6 MB
exact
3.82019-01-2115 elementsUnchangedrda · xz
version 2 · 3.6 MB
exact
3.72018-05-0915 elementsUnchangedrda · xz
version 2 · 3.6 MB
exact
3.62017-10-3015 elements–rda · xz
version 2 · 3.6 MB
exact

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