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NonCodingRNA_Eukarya

NonCoding Models for Common Non-Coding RNA Families

Bundled with DECIPHER · exported, loads via data()

Class
list
Elements
33
Missing
0
Format
rda · xz
version 3 · 297 KB
File
data/NonCodingRNA_Eukarya.RData
Fingerprint
548d2288
Source
Models were built from sequences belonging to families in tRNADB-CE (http://trna.ie.niigata-u.ac.jp/cgi-bin/trnadb/index.cgi) or Rfam (http://rfam.xfam.org).
About this object
A list with no shape constraintsRows of cells of visibly different widths, one below the next, with nothing lining them up and nothing in them, and under them a small block with a header band: an element of a list can be another structure. There is no common length, so there is no row count.list

R's general-purpose container. Elements can be any type and any size. R object catalogue

Structure
Distinct
33
Nesting depth
4
Element length
5 – 5
Total length
165
Nested rows
518
Nested columns
9
Nested schema
varies between elements
Elements
Element
Type
Distinct
Missing
Summary
tRNA-Ala
list
5
0
nested·13 rows nested·9 cols
Element length
0 – 122
Total length
206
Nesting depth
3
Nested rows
13
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
9 – 9
Total length
81
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
59
0
18 – 675mean 247.7
Min.
18
1st Qu.
118.75
Median
228
Mean
247.656
3rd Qu.
365.25
Max.
675
Std. dev
157.593
Skewness
0.5362
Kurtosis
-0.3948
lengthScores
numeric
122
0
-57.27 – 3.5226mean -27.66
Min.
-57.27
1st Qu.
-43.4457
Median
-28.4489
Mean
-27.6648
3rd Qu.
-12.2598
Max.
3.5226
Std. dev
18.182
Skewness
0.0814
Kurtosis
-1.246
tRNA-Arg
list
5
0
nested·11 rows nested·9 cols
Element length
0 – 94
Total length
178
Nesting depth
3
Nested rows
11
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
7 – 7
Total length
63
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
59
0
54 – 694mean 288.6
Min.
54
1st Qu.
185.75
Median
280
Mean
288.594
3rd Qu.
358.75
Max.
694
Std. dev
132.832
Skewness
0.6742
Kurtosis
0.1881
Outliers
10 low · 1 high
lengthScores
numeric
94
0
-182.018 – 3.1215mean -20.05
Min.
-182.018
1st Qu.
-28.3037
Median
-18.9677
Mean
-20.0508
3rd Qu.
-8.0559
Max.
3.1215
Std. dev
21.6771
Skewness
-4.607
Kurtosis
31.25
Outliers
22 low · 0 high
tRNA-Asn
list
5
0
nested·11 rows nested·9 cols
Element length
0 – 91
Total length
175
Nesting depth
3
Nested rows
11
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
8 – 8
Total length
72
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
56
0
13 – 425mean 137.9
Min.
13
1st Qu.
68.75
Median
125.5
Mean
137.938
3rd Qu.
193
Max.
425
Std. dev
86.6062
Skewness
0.7826
Kurtosis
0.5972
Outliers
10 low · 1 high
lengthScores
numeric
91
0
-113.022 – 3.2604mean -21.33
Min.
-113.022
1st Qu.
-32.0609
Median
-21.5773
Mean
-21.3298
3rd Qu.
-9.4334
Max.
3.2604
Std. dev
16.4585
Skewness
-1.697
Kurtosis
8.412
Outliers
11 low · 0 high
tRNA-Asp
list
5
0
nested·11 rows nested·9 cols
Element length
0 – 90
Total length
126
Nesting depth
3
Nested rows
11
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
7 – 7
Total length
63
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
15
0
358 – 1197mean 729.1
Min.
358
1st Qu.
506
Median
686.5
Mean
729.125
3rd Qu.
987.25
Max.
1197
Std. dev
290.883
Skewness
0.3077
Kurtosis
-1.433
lengthScores
numeric
90
0
-85.4032 – 3.3981mean -25.76
Min.
-85.4032
1st Qu.
-39.1335
Median
-27.0575
Mean
-25.7644
3rd Qu.
-12.226
Max.
3.3981
Std. dev
16.9356
Skewness
-0.2053
Kurtosis
0.0908
Outliers
11 low · 0 high
tRNA-Cys
list
5
0
nested·11 rows nested·9 cols
Element length
0 – 124
Total length
160
Nesting depth
3
Nested rows
11
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
8 – 8
Total length
72
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
16
0
147 – 461mean 297.2
Min.
147
1st Qu.
251.5
Median
286.5
Mean
297.25
3rd Qu.
350.5
Max.
461
Std. dev
78.6914
Skewness
0.1258
Kurtosis
-0.5936
lengthScores
numeric
124
0
-87.0652 – 3.6669mean -33.08
Min.
-87.0652
1st Qu.
-49.8977
Median
-33.6665
Mean
-33.0849
3rd Qu.
-15.2242
Max.
3.6669
Std. dev
21.6814
Skewness
-0.1357
Kurtosis
-0.7574
tRNA-Gln
list
5
0
nested·7 rows nested·9 cols
Element length
0 – 89
Total length
173
Nesting depth
3
Nested rows
7
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
5 – 5
Total length
45
Nesting depth
2
hairpins
list
11
0
nested
Element length
2 – 2
Total length
22
Nesting depth
2
kmers
integer
57
0
13 – 527mean 154.7
Min.
13
1st Qu.
99.75
Median
140
Mean
154.734
3rd Qu.
208.25
Max.
527
Std. dev
93.6942
Skewness
1.302
Kurtosis
2.669
Outliers
20 low · 2 high
lengthScores
numeric
89
0
-161.689 – 3.3223mean -23.7
Min.
-161.689
1st Qu.
-34.4943
Median
-23.3167
Mean
-23.6996
3rd Qu.
-10.3754
Max.
3.3223
Std. dev
20.7201
Skewness
-3.202
Kurtosis
19.66
Outliers
11 low · 0 high
tRNA-Glu
list
5
0
nested·9 rows nested·9 cols
Element length
0 – 94
Total length
178
Nesting depth
3
Nested rows
9
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
6 – 6
Total length
54
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
58
0
29 – 625mean 259.3
Min.
29
1st Qu.
144.25
Median
230.5
Mean
259.281
3rd Qu.
345.5
Max.
625
Std. dev
148.194
Skewness
0.7595
Kurtosis
-0.2329
lengthScores
numeric
94
0
-195.826 – 3.2455mean -22.05
Min.
-195.826
1st Qu.
-31.2589
Median
-21.1616
Mean
-22.0512
3rd Qu.
-9.3599
Max.
3.2455
Std. dev
23.1093
Skewness
-4.614
Kurtosis
31.84
Outliers
22 low · 0 high
tRNA-Gly
list
5
0
nested·9 rows nested·9 cols
Element length
0 – 89
Total length
173
Nesting depth
3
Nested rows
9
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
6 – 6
Total length
54
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
59
0
94 – 795mean 269.9
Min.
94
1st Qu.
155
Median
230
Mean
269.891
3rd Qu.
344.75
Max.
795
Std. dev
148.143
Skewness
1.2
Kurtosis
1.214
Outliers
10 low · 1 high
lengthScores
numeric
89
0
-132.143 – 3.473mean -27.9
Min.
-132.143
1st Qu.
-41.4368
Median
-28.839
Mean
-27.9014
3rd Qu.
-12.9538
Max.
3.473
Std. dev
19.9737
Skewness
-1.341
Kurtosis
6.236
Outliers
11 low · 0 high
tRNA-His
list
5
0
nested·9 rows nested·9 cols
Element length
0 – 95
Total length
179
Nesting depth
3
Nested rows
9
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
7 – 7
Total length
63
Nesting depth
2
hairpins
list
11
0
nested
Element length
2 – 2
Total length
22
Nesting depth
2
kmers
integer
57
0
14 – 303mean 99.36
Min.
14
1st Qu.
63.25
Median
87
Mean
99.3594
3rd Qu.
115.75
Max.
303
Std. dev
58.3425
Skewness
1.277
Kurtosis
1.665
Outliers
60 low · 6 high
lengthScores
numeric
95
0
-135.399 – 3.0099mean -16.42
Min.
-135.399
1st Qu.
-23.7196
Median
-15.6563
Mean
-16.4203
3rd Qu.
-6.1967
Max.
3.0099
Std. dev
16.8465
Skewness
-3.888
Kurtosis
24.5
Outliers
22 low · 0 high
tRNA-Ile
list
5
0
nested·10 rows nested·9 cols
Element length
0 – 91
Total length
127
Nesting depth
3
Nested rows
10
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
7 – 7
Total length
63
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
16
0
397 – 1108mean 719.5
Min.
397
1st Qu.
568.75
Median
648
Mean
719.5
3rd Qu.
877
Max.
1108
Std. dev
198.552
Skewness
0.2921
Kurtosis
-1.18
lengthScores
numeric
91
0
-163.668 – 3.3745mean -25
Min.
-163.668
1st Qu.
-36.3148
Median
-25.1468
Mean
-24.9952
3rd Qu.
-10.9825
Max.
3.3745
Std. dev
21.2692
Skewness
-2.956
Kurtosis
17.56
Outliers
11 low · 0 high
tRNA-Leu
list
5
0
nested·14 rows nested·9 cols
Element length
0 – 109
Total length
193
Nesting depth
3
Nested rows
14
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
11 – 11
Total length
99
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
59
0
69 – 842mean 337.1
Min.
69
1st Qu.
207
Median
280
Mean
337.109
3rd Qu.
424
Max.
842
Std. dev
179.109
Skewness
0.8131
Kurtosis
-0.2061
Outliers
10 low · 1 high
lengthScores
numeric
109
0
-212.39 – 3.1863mean -21.84
Min.
-212.39
1st Qu.
-29.1311
Median
-19.8782
Mean
-21.8365
3rd Qu.
-8.5715
Max.
3.1863
Std. dev
26.063
Skewness
-4.62
Kurtosis
28.34
Outliers
33 low · 0 high
tRNA-Lys
list
5
0
nested·11 rows nested·9 cols
Element length
0 – 112
Total length
196
Nesting depth
3
Nested rows
11
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
8 – 8
Total length
72
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
62
0
32 – 641mean 261.1
Min.
32
1st Qu.
157.75
Median
249
Mean
261.109
3rd Qu.
347.5
Max.
641
Std. dev
144.855
Skewness
0.5073
Kurtosis
-0.5815
Outliers
10 low · 1 high
lengthScores
numeric
112
0
-213.695 – 3.6159mean -31.47
Min.
-213.695
1st Qu.
-45.4144
Median
-31.7618
Mean
-31.4691
3rd Qu.
-15.3498
Max.
3.6159
Std. dev
25.1886
Skewness
-3.239
Kurtosis
22.09
Outliers
11 low · 0 high
tRNA-Met
list
5
0
nested·10 rows nested·9 cols
Element length
0 – 95
Total length
179
Nesting depth
3
Nested rows
10
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
7 – 7
Total length
63
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
57
0
43 – 361mean 176.7
Min.
43
1st Qu.
109.25
Median
175
Mean
176.688
3rd Qu.
219.25
Max.
361
Std. dev
79.692
Skewness
0.2956
Kurtosis
-0.5991
lengthScores
numeric
95
0
-161.769 – 2.9804mean -16.78
Min.
-161.769
1st Qu.
-23.2323
Median
-15.5959
Mean
-16.7797
3rd Qu.
-6.2905
Max.
2.9804
Std. dev
19.6698
Skewness
-4.633
Kurtosis
30.11
Outliers
22 low · 0 high
tRNA-Phe
list
5
0
nested·10 rows nested·9 cols
Element length
0 – 102
Total length
138
Nesting depth
3
Nested rows
10
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
6 – 6
Total length
54
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
16
0
179 – 797mean 489.9
Min.
179
1st Qu.
379.75
Median
477.5
Mean
489.875
3rd Qu.
610.25
Max.
797
Std. dev
169.241
Skewness
0.0745
Kurtosis
-0.9848
lengthScores
numeric
102
0
-94.4917 – 3.7381mean -39.92
Min.
-94.4917
1st Qu.
-59.9842
Median
-42.2867
Mean
-39.9205
3rd Qu.
-20.4126
Max.
3.7381
Std. dev
23.6687
Skewness
0.1792
Kurtosis
-1.04
tRNA-Pro
list
5
0
nested·11 rows nested·9 cols
Element length
0 – 86
Total length
170
Nesting depth
3
Nested rows
11
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
8
0
nested
Element length
7 – 7
Total length
63
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
59
0
11 – 868mean 217.1
Min.
11
1st Qu.
120
Median
197.5
Mean
217.109
3rd Qu.
274.25
Max.
868
Std. dev
144.21
Skewness
1.82
Kurtosis
4.921
Outliers
30 low · 3 high
lengthScores
numeric
86
0
-83.1397 – 3.6918mean -43.95
Min.
-83.1397
1st Qu.
-66.0866
Median
-47.0779
Mean
-43.9455
3rd Qu.
-23.0353
Max.
3.6918
Std. dev
25.7703
Skewness
0.2482
Kurtosis
-1.172
tRNA-Ser
list
5
0
nested·15 rows nested·9 cols
Element length
0 – 118
Total length
202
Nesting depth
3
Nested rows
15
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
12 – 12
Total length
108
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
62
0
86 – 772mean 354.3
Min.
86
1st Qu.
232.25
Median
322
Mean
354.312
3rd Qu.
470.5
Max.
772
Std. dev
167.903
Skewness
0.4523
Kurtosis
-0.4743
lengthScores
numeric
118
0
-133.777 – 3.1169mean -17.79
Min.
-133.777
1st Qu.
-26.0884
Median
-17.7975
Mean
-17.7869
3rd Qu.
-7.5611
Max.
3.1169
Std. dev
16.1968
Skewness
-3.29
Kurtosis
20.95
Outliers
22 low · 0 high
tRNA-Thr
list
5
0
nested·9 rows nested·9 cols
Element length
0 – 94
Total length
130
Nesting depth
3
Nested rows
9
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
6 – 6
Total length
54
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
16
0
313 – 1198mean 810.9
Min.
313
1st Qu.
670
Median
798.5
Mean
810.875
3rd Qu.
967.25
Max.
1198
Std. dev
241.982
Skewness
-0.1025
Kurtosis
-0.7717
lengthScores
numeric
94
0
-221.007 – 3.1505mean -21.51
Min.
-221.007
1st Qu.
-29.3164
Median
-19.9981
Mean
-21.5124
3rd Qu.
-8.3446
Max.
3.1505
Std. dev
25.8587
Skewness
-5.2
Kurtosis
36.18
Outliers
22 low · 0 high
tRNA-Trp
list
5
0
nested·10 rows nested·9 cols
Element length
0 – 88
Total length
124
Nesting depth
3
Nested rows
10
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
6 – 6
Total length
54
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
16
0
154 – 646mean 353.4
Min.
154
1st Qu.
270.25
Median
337
Mean
353.438
3rd Qu.
409.5
Max.
646
Std. dev
133.621
Skewness
0.7165
Kurtosis
-0.1929
Outliers
10 low · 1 high
lengthScores
numeric
88
0
-82.6953 – 3.3718mean -24.47
Min.
-82.6953
1st Qu.
-37.2541
Median
-25.8617
Mean
-24.4749
3rd Qu.
-11.4025
Max.
3.3718
Std. dev
16.298
Skewness
-0.2421
Kurtosis
0.2047
Outliers
11 low · 0 high
tRNA-Tyr
list
5
0
nested·10 rows nested·9 cols
Element length
0 – 114
Total length
198
Nesting depth
3
Nested rows
10
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
7 – 7
Total length
63
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
61
0
18 – 448mean 169.8
Min.
18
1st Qu.
99.25
Median
164.5
Mean
169.812
3rd Qu.
218.75
Max.
448
Std. dev
96.5217
Skewness
0.5683
Kurtosis
-0.1539
Outliers
10 low · 1 high
lengthScores
numeric
114
0
-184.029 – 3.3928mean -24.43
Min.
-184.029
1st Qu.
-35.2838
Median
-24.4421
Mean
-24.4317
3rd Qu.
-11.346
Max.
3.3928
Std. dev
21.4605
Skewness
-3.661
Kurtosis
24.95
Outliers
22 low · 0 high
tRNA-Val
list
5
0
nested·11 rows nested·9 cols
Element length
0 – 123
Total length
207
Nesting depth
3
Nested rows
11
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
7 – 7
Total length
63
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
62
0
63 – 724mean 248.3
Min.
63
1st Qu.
150.25
Median
209.5
Mean
248.266
3rd Qu.
307.75
Max.
724
Std. dev
139.79
Skewness
1.191
Kurtosis
1.19
Outliers
20 low · 2 high
lengthScores
numeric
123
0
-118.92 – 3.5693mean -33.36
Min.
-118.92
1st Qu.
-44.7258
Median
-30.6033
Mean
-33.3617
3rd Qu.
-14.1946
Max.
3.5693
Std. dev
26.5949
Skewness
-1.1
Kurtosis
1.222
Outliers
77 low · 0 high
rRNA_5.8S-RF00002
list
5
0
nested·23 rows nested·9 cols
Element length
0 – 345
Total length
621
Nesting depth
3
Nested rows
23
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
20 – 20
Total length
180
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
222
0
166 – 2860mean 584.4
Min.
166
1st Qu.
352.25
Median
491
Mean
584.359
3rd Qu.
726.5
Max.
2860
Std. dev
342.916
Skewness
2.015
Kurtosis
7.466
Outliers
120 low · 12 high
lengthScores
numeric
345
0
-64.4641 – 3.4465mean -28.44
Min.
-64.4641
1st Qu.
-46.9836
Median
-26.7023
Mean
-28.4356
3rd Qu.
-10.2797
Max.
3.4465
Std. dev
20.6229
Skewness
-0.1396
Kurtosis
-1.265
rRNA_5S-RF00001
list
5
0
nested·24 rows nested·9 cols
Element length
0 – 304
Total length
580
Nesting depth
3
Nested rows
24
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
20 – 20
Total length
180
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
221
0
101 – 1503mean 451.8
Min.
101
1st Qu.
239
Median
361.5
Mean
451.832
3rd Qu.
602.5
Max.
1503
Std. dev
282.847
Skewness
1.167
Kurtosis
1.088
Outliers
60 low · 6 high
lengthScores
numeric
304
0
-154.076 – 4.2421mean -73.12
Min.
-154.076
1st Qu.
-117.6
Median
-69.1509
Mean
-73.1198
3rd Qu.
-29.873
Max.
4.2421
Std. dev
48.5414
Skewness
-0.0629
Kurtosis
-1.326
rRNA_18S-RF01960
list
5
0
nested·35 rows nested·9 cols
Element length
0 – 10,034
Total length
10,310
Nesting depth
3
Nested rows
35
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
15 – 15
Total length
135
Nesting depth
2
hairpins
list
11
0
nested
Element length
20 – 20
Total length
220
Nesting depth
2
kmers
integer
244
0
1061 – 6982mean 2939
Min.
1061
1st Qu.
2254
Median
2810
Mean
2938.66
3rd Qu.
3467.25
Max.
6982
Std. dev
989.418
Skewness
0.8828
Kurtosis
1.119
Outliers
40 low · 4 high
lengthScores
numeric
10,034
0
-156.228 – 3.9448mean -83.87
Min.
-156.228
1st Qu.
-130.358
Median
-94.6256
Mean
-83.8705
3rd Qu.
-36.4965
Max.
3.9448
Std. dev
52.0101
Skewness
0.3444
Kurtosis
-1.271
rRNA_28S-RF02543
list
5
0
nested·32 rows nested·9 cols
Element length
0 – 9,411
Total length
9,687
Nesting depth
3
Nested rows
32
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
12 – 12
Total length
108
Nesting depth
2
hairpins
list
11
0
nested
Element length
20 – 20
Total length
220
Nesting depth
2
kmers
integer
244
0
1149 – 6908mean 3191
Min.
1149
1st Qu.
2503
Median
3045.5
Mean
3190.6
3rd Qu.
3742
Max.
6908
Std. dev
1014.89
Skewness
0.8959
Kurtosis
0.8685
Outliers
80 low · 8 high
lengthScores
numeric
9,411
0
-220.762 – 2.7257mean -11.24
Min.
-220.762
1st Qu.
-13.2853
Median
-9.0053
Mean
-11.2423
3rd Qu.
-3.3096
Max.
2.7257
Std. dev
20.9968
Skewness
-6.196
Kurtosis
44.71
Outliers
356356 low · 0 high
Histone_3'UTR-RF00032
list
5
0
nested·8 rows nested·9 cols
Element length
0 – 136
Total length
220
Nesting depth
3
Nested rows
8
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
7 – 7
Total length
63
Nesting depth
2
hairpins
list
11
0
nested
Element length
1 – 1
Total length
11
Nesting depth
2
kmers
integer
62
0
68 – 3068mean 692.4
Min.
68
1st Qu.
319
Median
564.5
Mean
692.391
3rd Qu.
970.5
Max.
3068
Std. dev
553.516
Skewness
2.034
Kurtosis
5.763
Outliers
20 low · 2 high
lengthScores
numeric
136
0
-172.302 – 4.3906mean -88.13
Min.
-172.302
1st Qu.
-136.875
Median
-89.9255
Mean
-88.1346
3rd Qu.
-41.3373
Max.
4.3906
Std. dev
53.8025
Skewness
0.0886
Kurtosis
-1.314
RNase_P-RF00009
list
5
0
nested·20 rows nested·9 cols
Element length
0 – 1,971
Total length
2,247
Nesting depth
3
Nested rows
20
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
16 – 16
Total length
144
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
233
0
544 – 2712mean 1388
Min.
544
1st Qu.
1061.25
Median
1326.5
Mean
1387.99
3rd Qu.
1668
Max.
2712
Std. dev
439.178
Skewness
0.5106
Kurtosis
-0.2155
Outliers
20 low · 2 high
lengthScores
numeric
1,971
0
-139.372 – 2.2972mean -4.503
Min.
-139.372
1st Qu.
-5.3547
Median
-3.5561
Mean
-4.5025
3rd Qu.
-0.8877
Max.
2.2972
Std. dev
11.1819
Skewness
-7.591
Kurtosis
67.45
Outliers
6565 low · 0 high
TPP_Riboswitch-RF00059
list
5
0
nested·17 rows nested·9 cols
Element length
0 – 399
Total length
675
Nesting depth
3
Nested rows
17
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
13 – 13
Total length
117
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
199
0
76 – 1029mean 326.8
Min.
76
1st Qu.
211.5
Median
275.5
Mean
326.844
3rd Qu.
411
Max.
1029
Std. dev
167.954
Skewness
1.356
Kurtosis
2.096
Outliers
100 low · 10 high
lengthScores
numeric
399
0
-6.6261 – 1.7302mean -2.28
Min.
-6.6261
1st Qu.
-4.6221
Median
-2.3437
Mean
-2.2795
3rd Qu.
0.1641
Max.
1.7302
Std. dev
2.6366
Skewness
0.0076
Kurtosis
-1.323
Sno_RNA_U3-RF00012
list
5
0
nested·23 rows nested·9 cols
Element length
0 – 507
Total length
783
Nesting depth
3
Nested rows
23
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
20 – 20
Total length
180
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
229
0
216 – 2962mean 808.9
Min.
216
1st Qu.
464.75
Median
676
Mean
808.934
3rd Qu.
1022.5
Max.
2962
Std. dev
472.604
Skewness
1.419
Kurtosis
2.045
Outliers
120 low · 12 high
lengthScores
numeric
507
0
-88.5876 – 3.2165mean -36.05
Min.
-88.5876
1st Qu.
-64.5605
Median
-32.4957
Mean
-36.0521
3rd Qu.
-6.7771
Max.
3.2165
Std. dev
30.3113
Skewness
-0.2427
Kurtosis
-1.436
Spliceosomal_U1-RF00003
list
5
0
nested·24 rows nested·9 cols
Element length
0 – 450
Total length
726
Nesting depth
3
Nested rows
24
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
20 – 20
Total length
180
Nesting depth
2
hairpins
list
11
0
nested
Element length
4 – 4
Total length
44
Nesting depth
2
kmers
integer
228
0
114 – 1964mean 615.2
Min.
114
1st Qu.
327.5
Median
541.5
Mean
615.188
3rd Qu.
816.25
Max.
1964
Std. dev
358.2
Skewness
1.041
Kurtosis
0.8577
Outliers
50 low · 5 high
lengthScores
numeric
450
0
-146.734 – 3.8214mean -64.22
Min.
-146.734
1st Qu.
-110.502
Median
-61.3969
Mean
-64.2249
3rd Qu.
-16.3532
Max.
3.8214
Std. dev
49.2429
Skewness
-0.1541
Kurtosis
-1.45
Spliceosomal_U2-RF00004
list
5
0
nested·26 rows nested·9 cols
Element length
0 – 463
Total length
739
Nesting depth
3
Nested rows
26
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
20 – 20
Total length
180
Nesting depth
2
hairpins
list
11
0
nested
Element length
6 – 6
Total length
66
Nesting depth
2
kmers
integer
230
0
140 – 3713mean 723.3
Min.
140
1st Qu.
421.25
Median
597
Mean
723.289
3rd Qu.
950.5
Max.
3713
Std. dev
460.606
Skewness
1.87
Kurtosis
6.576
Outliers
90 low · 9 high
lengthScores
numeric
463
0
-126.233 – 3.4637mean -51.92
Min.
-126.233
1st Qu.
-92.5768
Median
-47.5923
Mean
-51.9223
3rd Qu.
-9.5287
Max.
3.4637
Std. dev
43.1723
Skewness
-0.2315
Kurtosis
-1.453
Spliceosomal_U4-RF00015
list
5
0
nested·23 rows nested·9 cols
Element length
0 – 471
Total length
747
Nesting depth
3
Nested rows
23
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
20 – 20
Total length
180
Nesting depth
2
hairpins
list
11
0
nested
Element length
3 – 3
Total length
33
Nesting depth
2
kmers
integer
227
0
84 – 1971mean 469.1
Min.
84
1st Qu.
257.25
Median
381
Mean
469.086
3rd Qu.
568.25
Max.
1971
Std. dev
317.246
Skewness
1.642
Kurtosis
2.861
Outliers
190 low · 19 high
lengthScores
numeric
471
0
-215.657 – 2.7943mean -11.06
Min.
-215.657
1st Qu.
-13.3496
Median
-9.2454
Mean
-11.056
3rd Qu.
-3.6163
Max.
2.7943
Std. dev
20.1718
Skewness
-6.602
Kurtosis
51.43
Outliers
1616 low · 0 high
Spliceosomal_U6-RF00026
list
5
0
nested·22 rows nested·9 cols
Element length
0 – 398
Total length
482
Nesting depth
3
Nested rows
22
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
20 – 20
Total length
180
Nesting depth
2
hairpins
list
11
0
nested
Element length
2 – 2
Total length
22
Nesting depth
2
kmers
integer
64
0
175 – 4248mean 1616
Min.
175
1st Qu.
863.75
Median
1351.5
Mean
1616.17
3rd Qu.
2288.25
Max.
4248
Std. dev
990.009
Skewness
0.7236
Kurtosis
-0.2806
lengthScores
numeric
398
0
-208.536 – 4.2434mean -106.4
Min.
-208.536
1st Qu.
-169.487
Median
-116.798
Mean
-106.445
3rd Qu.
-35.475
Max.
4.2434
Std. dev
69.3885
Skewness
0.1933
Kurtosis
-1.388
SRP-RF01855
list
5
0
nested·29 rows nested·9 cols
Element length
0 – 906
Total length
1,182
Nesting depth
3
Nested rows
29
What is inside it
Element
Type
Distinct
Missing
Summary
motifs
list
9
0
nested
Element length
19 – 19
Total length
171
Nesting depth
2
hairpins
list
11
0
nested
Element length
10 – 10
Total length
110
Nesting depth
2
kmers
integer
245
0
208 – 4368mean 1171
Min.
208
1st Qu.
720.5
Median
1004
Mean
1171.45
3rd Qu.
1425.75
Max.
4368
Std. dev
698.527
Skewness
1.58
Kurtosis
3.258
Outliers
140 low · 14 high
lengthScores
numeric
906
0
-141.987 – 4.3378mean -70.21
Min.
-141.987
1st Qu.
-110.105
Median
-70.3278
Mean
-70.2069
3rd Qu.
-31.5468
Max.
4.3378
Std. dev
44.0124
Skewness
0.0355
Kurtosis
-1.266

The nested tables do not share one set of columns, so there is no single schema to show.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-07-3033 elementsUnchangedrda · xz
version 3 · 297 KB
exact
3.222025-10-2933 elementsUnchangedrda · xz
version 3 · 297 KB
exact
3.212025-04-1533 elementsUnchangedrda · xz
version 3 · 297 KB
exact
3.202024-10-2933 elementsUnchangedrda · xz
version 3 · 297 KB
exact
3.192024-04-3033 elementsUnchangedrda · xz
version 3 · 297 KB
exact
3.182023-10-2433 elementsUnchangedrda · xz
version 3 · 297 KB
exact
3.172023-04-2533 elementsUnchangedrda · xz
version 3 · 297 KB
exact
3.162022-11-0133 elementsUnchangedrda · xz
version 3 · 297 KB
exact
3.152022-04-2633 elementsUnchangedrda · xz
version 3 · 297 KB
exact
3.142021-10-2633 elementsUnchangedrda · xz
version 3 · 297 KB
exact
3.132021-05-1933 elements–rda · xz
version 3 · 297 KB
exact

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