R Observatory: Metrics for VIProDesign version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

VIProDesign

0.1.0Package record

A Comprehensive Tool for Protein Design

0packages depend

1.8Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Tatsiana BylundCRAN page ↗

Provides tools for designing virus protein panels through sequence clustering and protein sequence analysis. The package includes functionality for filtering sequences, removing redundancy, identifying outliers, clustering sequences, and calculating entropy to evaluate clustering quality. A publication describing these methods is in preparation and will be added once available.

Install

R (CRAN)Ubuntu (r2u)

install.packages("VIProDesign", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-viprodesign

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.3 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-09-08
ERROR12 OK, 1 ERROR2026-09-07
OK13 OK2026-08-09
ERROR11 OK, 1 NOTE, 1 ERROR2026-08-02
NOTE12 OK, 1 NOTE2026-08-01

Show 1 earlier changeHide 1 earlier change

OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.0

READMENoVignettesNoNEWSYes · 67% structured · does not mention 0.1.0Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 5
Examples that run: 100%4 run in a plain check
Exported functions with examples: 80%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

1.8K

CRAN downloads in the past year

Rank #22,724 · ~5/day · ~154/mo

Releases R versions

Daily download trend is not available in this view yet.

21130 days

57890 days

1.8K1 year

Compare downloads with other packages →

Also on69 r2u

How downloads are counted

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Installing VIProDesign adds 43 packages (22 with compiled code, 46 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB. 2 more not on CRAN are not measured.

Depends (0)

none

Imports (6)

Biostrings DECIPHERclusterpathviewr dbscan ape

LinkingTo (0)

none

Suggests (1)

optparse

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (1)

Tatsiana Bylund

Author, Maintainer since 0.1.0 (2025)

Releases (1)

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
record
2025-05-02 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-05-02
Total releases: 1 / 1 yrs
License: Apache License 2.0 OSI
Download size: 15 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("VIProDesign")

Format

Bylund, T. (2025). VIProDesign: A Comprehensive Tool for Protein Design (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.VIProDesign

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for VIProDesign version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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