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262 packages on Bioconductor, most distinct IPs first

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
MatrixGenerics
S4 Generic Summary Statistic Functions that Operate on Matrix-Like ObjectsPeter Hickey		Peter Hickeysoftware28 Apr 202652,7102
multtest
Resampling-based multiple hypothesis testingKatherine S. Pollard		Katherine S. Pollardsoftware28 Apr 202614,45715
MultiAssayExperiment
Software for the integration of multi-omics experiments in BioconductorMarcel Ramos		Marcel Ramossoftware28 Apr 20269,52345
metapod
Meta-Analyses on P-Values of Differential AnalysesAaron Lun		Aaron Lunsoftware28 Apr 20269,2703
mzR
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)Steffen Neumann		Steffen Neumannsoftware28 Apr 20265,63915
MSnbase
Base Functions and Classes for Mass Spectrometry and ProteomicsLaurent Gatto		Laurent Gattosoftware9 Aug 20265,521134
mixOmics
Omics Data Integration ProjectDerek Lei		Derek Leisoftware28 Apr 20265,37083
MsCoreUtils
Core Utils for Mass Spectrometry DataRforMassSpectrometry Package Maintainer		RforMassSpectrometry Package Maintainersoftware28 Apr 20265,02413
mzID
An mzIdentML parser for RLaurent Gatto		Laurent Gattosoftware28 Apr 20264,53211
monocle
Clustering, differential expression, and trajectory analysis for single- cell RNA-SeqCole Trapnell		Cole Trapnellsoftware28 Apr 20264,48574
minfi
Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 20264,041143
MetaboCoreUtils
Core Utils for Metabolomics DataJohannes Rainer		Johannes Rainersoftware30 Apr 20263,94024
MAST
Model-based Analysis of Single Cell TranscriptomicsAndrew McDavid		Andrew McDavidsoftware28 Apr 20263,74056
maftools
Summarize, Analyze and Visualize MAF FilesAnand Mayakonda		Anand Mayakondasoftware28 Apr 20263,52326
marray
Exploratory analysis for two-color spotted microarray dataYee Hwa (Jean) Yang		Yee Hwa (Jean) Yangsoftware28 Apr 20263,3117
microbiome
Microbiome AnalyticsLeo Lahti		Leo Lahtisoftware28 Apr 20263,10980
MassSpecWavelet
Peak Detection for Mass Spectrometry data using wavelet-based algorithmsSergio Oller Moreno		Sergio Oller Morenosoftware7 Jul 20263,0960
mia
Microbiome analysisTuomas Borman		Tuomas Bormansoftware28 Apr 20262,985122
msa
Multiple Sequence AlignmentUlrich Bodenhofer		Ulrich Bodenhofersoftware12 Aug 20262,97216
metagenomeSeq
Statistical analysis for sparse high-throughput sequencingJoseph N. Paulson		Joseph N. Paulsonsoftware28 Apr 20262,92432
MultiDataSet
Implementation of MultiDataSet and ResultSetXavier Escrib		Xavier Escribsoftware28 Apr 20262,83349
methylumi
Handle Illumina methylation dataSean Davis		Sean Davissoftware16 Aug 20262,825158
motifmatchr
Fast Motif Matching in RAlicia Schep		Alicia Schepsoftware28 Apr 20262,66881
MsFeatures
Functionality for Mass Spectrometry FeaturesJohannes Rainer		Johannes Rainersoftware28 Apr 20262,50531
Mfuzz
Soft clustering of omics time series dataMatthias Futschik		Matthias Futschiksoftware28 Apr 20262,35316
MsExperiment
Infrastructure for Mass Spectrometry ExperimentsLaurent Gatto		Laurent Gattosoftware28 Apr 20262,287112
miloR
Differential neighbourhood abundance testing on a graphMike Morgan		Mike Morgansoftware12 May 20262,130101
missMethyl
Analysing Illumina HumanMethylation BeadChip DataBelinda Phipson		Belinda Phipsonsoftware12 May 20261,987169
MOFA2
Multi-Omics Factor Analysis v2Ricard Argelaguet		Ricard Argelaguetsoftware6 Sep 20261,96785
MotifDb
An Annotated Collection of Protein-DNA Binding Sequence MotifsPaul Shannon		Paul Shannonsoftware28 Apr 20261,94459