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metagenomeSeq

Bioc current

Statistical analysis for sparse high-throughput sequencing

v1.54.0 · software · Artistic-2.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 2.12 · Apr 4, 2013

Current · Requires R 4.6

1.0 In 27 of 49 releases 3.23

Description

metagenomeSeq is designed to determine features (be it Operational Taxanomic Unit (OTU), species, etc.) that are differentially abundant between two or more groups of multiple samples. metagenomeSeq is designed to address the effects of both normalization and under-sampling of microbial communities on disease association detection and the testing of feature correlations.

Code

Code metrics have not been computed for this package yet.

Topics

Software › ResearchField › Immunology › ImmunoOncology
Software › StatisticalMethod › Classification
Software › StatisticalMethod › Clustering
Software › AssayDomain › GeneticVariability
Software › BiologicalQuestion › DifferentialExpression
Software › Technology › Sequencing › Microbiome
Software › ResearchField › Metagenomics
Software › WorkflowStep › Normalization
Software › WorkflowStep › Visualization
Software › WorkflowStep › MultipleComparison
Software › Technology › Sequencing
Software

Depended on by (16)

Bioconductor (14)

benchdamic Maaslin2 mbQTL microbiomeDASim microbiomeExplorer phyloseq scTreeViz Wrench etec16s msd16s interactiveDisplay metavizr microbiomeMarker palmtree

CRAN (2)

MiscMetabar ggpicrust2

People

Joseph N. Paulson