motifmatchr
Bioc currentFast Motif Matching in R
Release Lineage
Entered 3.6 · Oct 31, 2017
Current · Requires R 4.6
Description
Quickly find motif matches for many motifs and many sequences. Wraps C++ code from the MOODS motif calling library, which was developed by Pasi Rastas, Janne Korhonen, and Petri Martinmäki.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
111 5 exported
Complexity
2.2 avg / 6 max
Call network
111 nodes / 66 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,427
Files
74
Compiled share
61.9%
Has compiled src
Yes
Language breakdown
API
Exported functions
9
Internal functions
11
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.44
testthat edition
–
CI present
Yes
CI type
["travis"]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.3
System requirements
1
C++ standard
C++11
License
GPL-3 + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
18
First release
2017-10-31
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
Depended on by (14)
Bioconductor (13)
CRAN (1)
People
- Alicia Schep author maintainer
- Stanford University cph