MetaboCoreUtils
Bioc currentCore Utils for Metabolomics Data
Release Lineage
Entered 3.13 · May 20, 2021
Current · Requires R 4.6
Description
MetaboCoreUtils defines metabolomics-related core functionality provided as low-level functions to allow a data structure-independent usage across various R packages. This includes functions to calculate between ion (adduct) and compound mass-to-charge ratios and masses or functions to work with chemical formulas. The package provides also a set of adduct definitions and information on some commercially available internal standard mixes commonly used in MS experiments.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
66 40 exported
Complexity
2.8 avg / 11 max
Call network
66 nodes / 50 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
6,269
Files
79
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
40
Internal functions
26
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.53
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
11
First release
2021-05-19
Latest release
2026-04-30
Avg cadence
182 days
Cold removal rate
–
Dep drift
5
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 30
- Examples that run
- 100%30 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 10%
- Add
adductCharge()andstandardizeSingleCharge()functions.
From NEWS.md in the release
Repository practices
7 development-tooling and community-health practices detected across 4 families in the upstream repository
Checks run against github.com/rformassspectrometry/metabocoreutils on 2026-10-18.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
GitHub Pages site last deployed 2026-04-30 · The repository has a site deploy workflow
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| software_mapping_schema | data.frame | 30 × 10 | No other package |
Topics
Depended on by (7)
Bioconductor (6)
CRAN (1)
People
- Johannes Rainer author maintainer
- Sebastian Gibb author
- Roger Gine author
- William Kumler author
- Philippine Louail author
- Liesa Salzer contributor
- Michael Stravs contributor
-
Gabriele Tomè
author
MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded by the Autonomous Province of Bolzano under the Joint…
- Andrea Vicini author
- Michael Witting author
Cite
Cite this package
Run in R for the authors' entry:
citation("MetaboCoreUtils")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.3390/metabo12020173.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.