Mfuzz
Bioc currentSoft clustering of omics time series data
Release Lineage
Entered 1.8 · Apr 27, 2006
Current · Requires R 4.6
Description
The Mfuzz package implements noise-robust soft clustering of omics time-series data, including transcriptomic, proteomic or metabolomic data. It is based on the use of c-means clustering. For convenience, it includes a graphical user interface.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
23 23 exported
Complexity
8.7 avg / 82 max
Call network
23 nodes / 14 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,633
Files
60
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
23
Internal functions
59
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
20%
Unsafe pattern score
0
Dep constraint coverage
25%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.5.0
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
41
First release
2006-05-05
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 26
- Examples that run
- 100%21 run in a plain check (19 of them under a condition)
- Exported functions with examples
- 91%
- Documented parameters
- 100%
- Return-value docs
- 96%
- Help pages citing references
- 42%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| yeast | – | – | – |
| yeast.table | data.frame | 2,952 × 18 | No other package |
| yeast.table2 | data.frame | 2,951 × 19 | No other package |
Topics
Depended on by (4)
Bioconductor (3)
CRAN (1)
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' entry:
citation("Mfuzz")The package provides a citation file, so citation() returns the authors' own entry.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.