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katdetectr

Bioc current

Detection, Characterization and Visualization of Kataegis in Sequencing Data

v1.14.0 · software · GPL-3 + file LICENSE
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Release Lineage

Entered 3.16 · Nov 2, 2022

Current · Requires R 4.6

1.0 In 8 of 49 releases 3.23

Description

Kataegis refers to the occurrence of regional hypermutation and is a phenomenon observed in a wide range of malignancies. Using changepoint detection katdetectr aims to identify putative kataegis foci from common data-formats housing genomic variants. Katdetectr has shown to be a robust package for the detection, characterization and visualization of kataegis.

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Topics

Software › Technology › Sequencing › WholeGenome
Software
Software › AssayDomain › SNP
Software › Technology › Sequencing
Software › StatisticalMethod › Classification
Software › BiologicalQuestion › VariantAnnotation

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