broadSeq
Bioc currentbroadSeq : for streamlined exploration of RNA-seq data
Release Lineage
Entered 3.20 · Oct 30, 2024
Current · Requires R 4.6
Description
This package helps user to do easily RNA-seq data analysis with multiple methods (usually which needs many different input formats). Here the user will provid the expression data as a SummarizedExperiment object and will get results from different methods. It will help user to quickly evaluate different methods.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
30 25 exported
Complexity
2.5 avg / 6 max
Call network
30 nodes / 17 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,836
Files
39
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
25
Internal functions
5
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
12
Dep constraint coverage
36.8%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
4
First release
2024-10-29
Latest release
2026-04-28
Avg cadence
255 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Rishi Das Roy author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("broadSeq")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.