cbaf
Bioc currentAutomated functions for comparing various omic data from cbioportal.org
Release Lineage
Entered 3.6 · Oct 31, 2017
Current · Requires R 4.6
Description
This package contains functions that allow analysing and comparing omic data across various cancers/cancer subgroups easily. So far, it is compatible with RNA-seq, microRNA-seq, microarray and methylation datasets that are stored on cbioportal.org.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
10 9 exported
Complexity
40.7 avg / 87 max
Call network
10 nodes / 8 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
9,591
Files
59
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
9
Internal functions
1
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
18
First release
2017-11-12
Latest release
2026-04-28
Avg cadence
169 days
Cold removal rate
–
Dep drift
5
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 95%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Arman Shahrisa author maintainer cph
- Maryam Tahmasebi Birgani author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("cbaf")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.