Description
Software which provides numerous functionalities for detecting and removing group-level effects from high-dimensional scientific data which, when combined with additional assumptions, allow for causal conclusions, as-described in our manuscripts Bridgeford et al. (2024) <doi:10.1101/2021.09.03.458920> and Bridgeford et al. (2023) <doi:10.48550/arXiv.2307.13868>. Also provides a number of useful utilities for generating simulations and balancing covariates across multiple groups/batches of data via matching and propensity trimming for more than two groups.
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OK
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 27, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 20, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
tests
Running ‘testthat.R’ [27s/36s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional ...[truncated]... hing.R:106:3'): VM throws warning when samples retained is low ── Expected `cb.align.vm_trim(sim.low$Ts, sim.low$Xs, retain.ratio = 0.8)` to throw a warning. [ FAIL 1 | WARN 1 | SKIP 3 | PASS 47 ] Error: ! Test failures. Execution halted
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 17, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 16, 2026
ERROR
r-devel-linux-x86_64-fedora-gcc
tests
Running ‘testthat.R’ [68s/78s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional
...[truncated]...
lure ('test-causal_ccombat.R:70:3'): AIPW cComBat raises warning when few samples are retained ──
Expected `cb.correct.aipw_cComBat(...)` to throw a warning.
[ FAIL 1 | WARN 1 | SKIP 3 | PASS 47 ]
Error:
! Test failures.
Execution halted
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
package dependencies
Packages required but not available: 'sva', 'genefilter' Package suggested but not available for checking: ‘ggpubr’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 1, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 28, 2026
ERROR
r-oldrel-windows-x86_64
tests
Running 'testthat.R' [44s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test ...[truncated]... hing.R:106:3'): VM throws warning when samples retained is low ── Expected `cb.align.vm_trim(sim.low$Ts, sim.low$Xs, retain.ratio = 0.8)` to throw a warning. [ FAIL 1 | WARN 1 | SKIP 3 | PASS 47 ] Error: ! Test failures. Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 21, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 16, 2026
ERROR
r-devel-linux-x86_64-fedora-gcc
tests
Running ‘testthat.R’ [74s/219s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional
...[truncated]...
══════
── Failure ('test-causal_cdcorr.R:122:3'): raises warning when few samples are retained ──
Expected `cb.detect.caus_cdcorr(...)` to throw a warning.
[ FAIL 1 | WARN 1 | SKIP 3 | PASS 47 ]
Error:
! Test failures.
Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 10, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 9, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
package dependencies
Package required but not available: ‘MatchIt’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.