codelink
Bioc currentManipulation of Codelink microarray data
Release Lineage
Entered 1.8 · Apr 27, 2006
Current · Requires R 4.6
Description
This package facilitates reading, preprocessing and manipulating Codelink microarray data. The raw data must be exported as text file using the Codelink software.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
35 18 exported
Complexity
8.5 avg / 57 max
Call network
35 nodes / 15 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,590
Files
56
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
20
Internal functions
17
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
100%
Unsafe pattern score
0
Dep constraint coverage
40%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.10
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
41
First release
2006-04-25
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
7
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 34 (1 internal)
- Examples that run
- 14%3 run in a plain check · 19 never run
- Exported functions with examples
- 79%
- Documented parameters
- 99%
- Return-value docs
- 47%
- Help pages citing references
- 0%
Repository practices
1 development-tooling and community-health practice detected across 1 family in the upstream repository
Checks run against github.com/ddiez/codelink on 2026-10-11.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| codelink.example | Codelink | 11 elements | No other package |
| codset | – | – | – |
Topics
Suggested by (2)
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' entry:
citation("codelink")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1093/bioinformatics/btm072.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.