derfinderPlot
Bioc currentPlotting functions for derfinder
Release Lineage
Entered 3.0 · Oct 14, 2014
Current · Requires R 4.6
Description
This package provides plotting functions for results from the derfinder package. This helps separate the graphical dependencies required for making these plots from the core functionality of derfinder.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
8 4 exported
Complexity
6.8 avg / 26 max
Call network
8 nodes / 4 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,014
Files
20
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
4
Internal functions
4
Testing
Has tests
Yes
Test-to-code ratio
0.25
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
33.3%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.2
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
24
First release
2015-02-22
Latest release
2026-04-28
Avg cadence
181 days
Cold removal rate
100%
Dep drift
9
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 5 (1 internal)includes a package overview page
- Examples that run
- 100%4 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 96%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
12 development-tooling and community-health practices detected across 5 families in the upstream repository
Checks run against github.com/leekgroup/derfinderplot on 2026-10-11.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
GitHub Pages site last deployed 2026-03-31 · The repository has a site deploy workflow
Show all practicesHide 1 practice
Topics
Depended on by (2)
Bioconductor (2)
Suggested by (3)
People
- Leonardo Collado-Torres author maintainer
- Andrew E. Jaffe author
- Jeffrey T. Leek author thesis advisor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("derfinderPlot")The package provides a citation file that builds its entry when R runs it. Run citation() to see it.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.