karyoploteR
Bioc currentPlot customizable linear genomes displaying arbitrary data
Release Lineage
Entered 3.5 · Apr 25, 2017
Current · Requires R 4.6
Description
karyoploteR creates karyotype plots of arbitrary genomes and offers a complete set of functions to plot arbitrary data on them. It mimicks many R base graphics functions coupling them with a coordinate change function automatically mapping the chromosome and data coordinates into the plot coordinates. In addition to the provided data plotting functions, it is easy to add new ones.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
87 67 exported
Complexity
9 avg / 43 max
Call network
87 nodes / 119 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
14,497
Files
145
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
68
Internal functions
20
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.05
testthat edition
–
CI present
Yes
CI type
["travis"]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
50%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.4
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
19
First release
2017-10-06
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
7
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
Depended on by (12)
Bioconductor (10)
CRAN (2)
People
- Bernat Gel author maintainer