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OUTRIDER

Bioc current

OUTRIDER - OUTlier in RNA-Seq fInDER

v1.30.0 · software · file LICENSE
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Release Lineage

Entered 3.8 · Oct 31, 2018

Current · Requires R 4.6

1.0 In 16 of 49 releases 3.23

Description

Identification of aberrant gene expression in RNA-seq data. Read count expectations are modeled by an autoencoder to control for confounders in the data. Given these expectations, the RNA-seq read counts are assumed to follow a negative binomial distribution with a gene-specific dispersion. Outliers are then identified as read counts that significantly deviate from this distribution. Furthermore, OUTRIDER provides useful plotting functions to analyze and visualize the results.

Code

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Topics

Software › ResearchField › Immunology › ImmunoOncology
Software › Technology › Sequencing › RNASeq
Software › ResearchField › Transcriptomics
Software › WorkflowStep › Alignment
Software › Technology › Sequencing
Software › AssayDomain › GeneExpression
Software › ResearchField › Genetics

Depended on by (1)

Bioconductor (1)

FRASER

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