LOLA
Bioc currentLocus overlap analysis for enrichment of genomic ranges
Release Lineage
Entered 3.2 · Oct 14, 2015
Current · Requires R 4.6
Description
Provides functions for testing overlap of sets of genomic regions with public and custom region set (genomic ranges) databases. This makes it possible to do automated enrichment analysis for genomic region sets, thus facilitating interpretation of functional genomics and epigenomics data.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
39 20 exported
Complexity
3.1 avg / 10 max
Call network
39 nodes / 49 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,945
Files
87
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
20
Internal functions
19
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.11
testthat edition
–
CI present
Yes
CI type
["travis"]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
25%
Unsafe pattern score
2
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.10
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
22
First release
2015-12-10
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
6
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 95%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 3%
Topics
Depended on by (5)
People
- Nathan Sheffield author maintainer
- Christoph Bock contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("LOLA")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.