R453Plus1Toolbox
Bioc currentA package for importing and analyzing data from Roche's Genome Sequencer System
Release Lineage
Entered 2.7 · Oct 18, 2010
Current · Requires R 4.6
Description
The R453Plus1 Toolbox comprises useful functions for the analysis of data generated by Roche's 454 sequencing platform. It adds functions for quality assurance as well as for annotation and visualization of detected variants, complementing the software tools shipped by Roche with their product. Further, a pipeline for the detection of structural variants is provided.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
114 5 exported
Complexity
5.5 avg / 39 max
Call network
114 nodes / 65 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
15,261
Files
205
Compiled share
7%
Has compiled src
Yes
Language breakdown
API
Exported functions
5
Internal functions
102
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
30.4%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.12.0
System requirements
–
C++ standard
–
License
LGPL-3
License flags
SPDX valid, OSI approved
History
Versions
32
First release
2010-10-20
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
–
Dep drift
16
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 93%
- Documented parameters
- 100%
- Return-value docs
- 25%
- References docs
- 5%
Topics
People
Hans-Ulrich Klein
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("R453Plus1Toolbox")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.