gcrma
Bioc currentBackground Adjustment Using Sequence Information
Release Lineage
Entered 1.4 · May 17, 2004
Current · Requires R 4.6
Description
Background adjustment using sequence information
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
39 31 exported
Complexity
5.9 avg / 19 max
Call network
39 nodes / 73 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,376
Files
33
Compiled share
5.9%
Has compiled src
Yes
Language breakdown
API
Exported functions
31
Internal functions
3
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
33.3%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.6.0
System requirements
–
C++ standard
–
License
LGPL
License flags
not SPDX, not OSI
History
Versions
45
First release
2004-08-23
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
15
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 11 (2 internal)
- Examples that run
- 100%2 run in a plain check
- Exported functions with examples
- 20%
- Documented parameters
- 99%
- Return-value docs
- 100%
- Help pages citing references
- 9%
- gcrma1.2 PDF
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| affinity.spline.coefs | vector | 15 elements | No other package |
Topics
Depended on by (9)
Show all 14 packagesHide all 14 packages
Bioconductor (9)
Suggested by (5)
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("gcrma")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-19, which the citation names so these numbers can be found later. More on citing and the projects behind them.