microSTASIS
Bioc currentMicrobiota STability ASsessment via Iterative cluStering
Release Lineage
Entered 3.17 · Apr 26, 2023
Current · Requires R 4.6
Description
The toolkit 'µSTASIS', or microSTASIS, has been developed for the stability analysis of microbiota in a temporal framework by leveraging on iterative clustering. Concretely, the core function uses Hartigan-Wong k-means algorithm as many times as possible for stressing out paired samples from the same individuals to test if they remain together for multiple numbers of clusters over a whole data set of individuals. Moreover, the package includes multiple functions to subset samples from paired times, validate the results or visualize the output.
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Topics
People
- Pedro Sánchez-Sánchez author maintainer
- Alfonso Benítez-Páez author
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