microSTASIS
Bioc currentMicrobiota STability ASsessment via Iterative cluStering
Release Lineage
Entered 3.17 · Apr 26, 2023
Current · Requires R 4.6
Description
The toolkit 'µSTASIS', or microSTASIS, has been developed for the stability analysis of microbiota in a temporal framework by leveraging on iterative clustering. Concretely, the core function uses Hartigan-Wong k-means algorithm as many times as possible for stressing out paired samples from the same individuals to test if they remain together for multiple numbers of clusters over a whole data set of individuals. Moreover, the package includes multiple functions to subset samples from paired times, validate the results or visualize the output.
None published for Bioconductor
Call graph
Open call graph →Code intelligence has not been computed for this package yet.
Code
Code metrics have not been computed for this package yet.
Repository practices
Checks run against github.com/biotechpedro/microstasis on 2026-10-18.
No development-tooling practices detected in the upstream repository.
Topics
People
- Pedro Sánchez-Sánchez author maintainer
- Alfonso Benítez-Páez author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("microSTASIS")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.