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treeio

Bioc current

Base Classes and Functions for Phylogenetic Tree Input and Output

v1.36.1 · software · Artistic-2.0
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Release Lineage

Entered 3.5 · Apr 25, 2017

Current · Requires R 4.6

1.0 In 19 of 49 releases 3.23

Description

'treeio' is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.

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Topics

Software
Software › WorkflowStep › Annotation
Software › StatisticalMethod › Clustering
Software › Infrastructure › DataImport
Software › Infrastructure › DataRepresentation
Software › WorkflowStep › Alignment
Software › WorkflowStep › Alignment › MultipleSequenceAlignment
Software › ResearchField › Phylogenetics

Depended on by (20)

Bioconductor (9)

ggtree ggtreeDendro ggtreeExtra lefser MicrobiotaProcess rfaRm TreeSummarizedExperiment geneplast.data CGRphylo2

CRAN (11)

BioVizSeq EvoPhylo RPesto RevGadgets dowser shinyTempSignal FossilSim MetaNet idiogramFISH nosoi treestructure

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