mikropml
User-Friendly R Package for Supervised Machine Learning Pipelines
Description
An interface to build machine learning models for classification and regression problems. 'mikropml' implements the ML pipeline described by Topçuoğlu et al. (2020) <doi:10.1128/mBio.00434-20> with reasonable default options for data preprocessing, hyperparameter tuning, cross-validation, testing, model evaluation, and interpretation steps. See the website <https://www.schlosslab.org/mikropml/> for more information, documentation, and examples.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | ERROR |
| r-oldrel-macos-x86_64 | ERROR |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (4 non-OK)
dependencies in R code
Namespace in Imports field not imported from: ‘methods’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘methods’ All declared Imports should be used.
package dependencies
Package required but not available: ‘TreeSummarizedExperiment’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
package dependencies
Package required but not available: ‘TreeSummarizedExperiment’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
Check History
ERROR 8 OK · 3 NOTE · 0 WARNING · 3 ERROR · 0 FAILURE Mar 10, 2026
dependencies in R code
Namespace in Imports field not imported from: ‘methods’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘methods’ All declared Imports should be used.
package dependencies
Package required but not available: ‘TreeSummarizedExperiment’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
package dependencies
Package required but not available: ‘TreeSummarizedExperiment’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
package dependencies
Package required but not available: ‘TreeSummarizedExperiment’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
data for non-ASCII characters
Error loading dataset 'otu_mini_bin_results_xgbTree':
Error in xgb.get.handle(model) :
'xgb.Booster' object is corrupted or is from an incompatible XGBoost version.