bnbc
Bioc currentBandwise normalization and batch correction of Hi-C data
Release Lineage
Entered 3.6 · Oct 31, 2017
Current · Requires R 4.6
Description
Tools to normalize (several) Hi-C data from replicates.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
39 20 exported
Complexity
1.6 avg / 9 max
Call network
39 nodes / 30 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,486
Files
31
Compiled share
10.8%
Has compiled src
Yes
Language breakdown
API
Exported functions
20
Internal functions
7
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
6.3%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
18
First release
2017-10-30
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
6
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 11includes a package overview page
- Examples that run
- 90%9 run in a plain check · 1 never run
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 36%
- bnbc User's Guide HTML
Repository practices
1 development-tooling and community-health practice detected across 1 family in the upstream repository
Checks run against github.com/hansenlab/bnbc on 2026-10-11.
Datasets
Topics
People
- Kipper Fletez-Brant maintainer author
- Kasper Daniel Hansen author
Cite
Cite this package
Run in R for the authors' entry:
citation("bnbc")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1101/214361.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.