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BasicSTARRseq

Bioc current

Basic peak calling on STARR-seq data

v1.40.0 · software · LGPL-3
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.3 · May 4, 2016

Current · Requires R 4.6

1.0 In 21 of 49 releases 3.23

Description

Basic peak calling on STARR-seq data based on a method introduced in "Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq" Arnold et al. Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science. 1232542. Epub 2013 Jan 17.

Code

Code metrics have not been computed for this package yet.

Topics

Software › BiologicalQuestion › PeakDetection
Software › BiologicalQuestion › GeneRegulation
Software › BiologicalQuestion › FunctionalPrediction
Software › ResearchField › FunctionalGenomics
Software › BiologicalQuestion › Coverage

People

Annika Buerger