BiSeq
Bioc currentProcessing and analyzing bisulfite sequencing data
Release Lineage
Entered 2.12 · Apr 4, 2013
Current · Requires R 4.6
Description
The BiSeq package provides useful classes and functions to handle and analyze targeted bisulfite sequencing (BS) data such as reduced-representation bisulfite sequencing (RRBS) data. In particular, it implements an algorithm to detect differentially methylated regions (DMRs). The package takes already aligned BS data from one or multiple samples.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
35 0 exported
Complexity
6.6 avg / 30 max
Call network
35 nodes / 3 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
8,122
Files
87
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
36
Internal functions
35
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
10%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.15.2
System requirements
–
C++ standard
–
License
LGPL-3
License flags
SPDX valid, OSI approved
History
Versions
27
First release
2013-08-16
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
6
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 73%
- References docs
- 22%
Topics
Depended on by (3)
Bioconductor (3)
People
Katja Hebestreit