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Topic: ExperimentData or MultipleComparison

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Release: Release 3.7 (2018)

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465 packages on Bioconductor tagged ExperimentData or MultipleComparison, most distinct IPs first

ExperimentData and MultipleComparison in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
ggtree
an R package for visualization of tree and annotation dataGuangchuang Yu		Guangchuang Yusoftware29 Oct 202634,37279
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
clusterProfiler
A Universal Enrichment Tool for Interpreting Omics DataGuangchuang Yu		Guangchuang Yusoftware19 Oct 202629,661138
DOSE
Disease Ontology Semantic and Enrichment analysisGuangchuang Yu		Guangchuang Yusoftware28 Apr 202628,87377
multtest
Resampling-based multiple hypothesis testingKatherine S. Pollard		Katherine S. Pollardsoftware28 Apr 202614,45715
sva
Surrogate Variable AnalysisJeffrey T. Leek		Jeffrey T. Leeksoftware5 May 202610,80468
phyloseq
Handling and analysis of high-throughput microbiome census dataPaul J. McMurdie		Paul J. McMurdiesoftware28 Apr 20268,37966
ReactomePA
Reactome Pathway AnalysisGuangchuang Yu		Guangchuang Yusoftware28 Apr 20266,720141
TCGAbiolinksGUI.data
Data for the TCGAbiolinksGUI packageTiago Chedraoui Silva		Tiago Chedraoui Silvaexperiment5 May 20265,7580
siggenes
Multiple Testing using SAM and Efron's Empirical Bayes ApproachesHolger Schwender		Holger Schwendersoftware28 Apr 20264,90117
monocle
Clustering, differential expression, and trajectory analysis for single- cell RNA-SeqCole Trapnell		Cole Trapnellsoftware28 Apr 20264,48574
bumphunter
Bump HunterTamilselvi Guharaj		Tamilselvi Guharajsoftware28 Apr 20264,26883
ALL
A data packageRobert Gentleman		Robert Gentlemanexperiment5 May 20264,1717
ChIPseeker
ChIPseeker for ChIP peak Annotation, Comparison, and VisualizationGuangchuang Yu		Guangchuang Yusoftware28 Apr 20263,962158
HSMMSingleCell
Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM)Cole Trapnell		Cole Trapnellexperiment5 May 20263,5530
msa
Multiple Sequence AlignmentUlrich Bodenhofer		Ulrich Bodenhofersoftware12 Aug 20262,97216
metagenomeSeq
Statistical analysis for sparse high-throughput sequencingJoseph N. Paulson		Joseph N. Paulsonsoftware28 Apr 20262,92432
airway
RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014Michael Love		Michael Loveexperiment5 May 20262,85425
DiffBind
Differential Binding Analysis of ChIP-Seq Peak DataRory Stark		Rory Starksoftware21 Jul 20262,490141
GOstats
Tools for manipulating GO and microarraysBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20262,43763
geneLenDataBase
Lengths of mRNA transcripts for a number of genomesFederico Marini		Federico Mariniexperiment5 May 20262,37898
scRNAseq
Collection of Public Single-Cell RNA-Seq DatasetsAaron Lun		Aaron Lunexperiment5 May 20262,314121
bcellViper
Human B-cell transcriptional interactome and normal human B-cell expression dataMariano Javier Alvarez		Mariano Javier Alvarezexperiment5 May 20262,1777
IHW
Independent Hypothesis WeightingNikos Ignatiadis		Nikos Ignatiadissoftware28 Apr 20261,93110
gage
Generally Applicable Gene-set Enrichment for Pathway AnalysisWeijun Luo		Weijun Luosoftware28 Apr 20261,92944
DMRcate
Methylation array and sequencing spatial analysis methodsTim Peters		Tim Peterssoftware3 May 20261,838224
GeneOverlap
Test and visualize gene overlapsAnt		Antsoftware28 Apr 20261,7019
multiMiR
Integration of multiple microRNA-target databases with their disease and drug associationsSpencer Mahaffey		Spencer Mahaffeysoftware28 Apr 20261,56953
pasilla
Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.Alejandro Reyes		Alejandro Reyesexperiment5 May 20261,554108