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Disease Ontology Semantic and Enrichment analysis

v4.6.0 · software · Artistic-2.0
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Release Lineage

Entered 2.9 · Nov 1, 2011

Current · Requires R 4.6

1.0 In 30 of 49 releases 3.23

Description

This package implements five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for measuring semantic similarities among DO terms and gene products. Enrichment analyses including hypergeometric model and gene set enrichment analysis are also implemented for discovering disease associations of high-throughput biological data.

Code

Code metrics have not been computed for this package yet.

Topics

Software › WorkflowStep › Annotation
Software › WorkflowStep › Visualization
Software › WorkflowStep › MultipleComparison
Software › BiologicalQuestion › GeneSetEnrichment
Software › WorkflowStep › Pathways
Software

Depended on by (40)

Bioconductor (37)

bioCancer clusterProfiler cola debrowser enrichplot GDCRNATools GOaGO goatea GOSemSim GRaNIE miRSM miRspongeR Moonlight2R MoonlightR Pigengene RegEnrich rrvgo scFeatures scGPS scGraphVerse scTensor signatureSearch SVMDO TDbasedUFEadv vsclust ExpHunterSuite BenchHub eegc facopy fatTissueTumor +7 more

CRAN (3)

IOBR enrichit ggpicrust2

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