ReactomePA
Bioc currentReactome Pathway Analysis
Release Lineage
Entered 2.10 · Apr 2, 2012
Current · Requires R 4.6
Description
This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization. This package is not affiliated with the Reactome team.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
10 4 exported
Complexity
2.5 avg / 6 max
Call network
10 nodes / 9 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
903
Files
33
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
12
Internal functions
6
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.02
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
6
Dep constraint coverage
20%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.4.0
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
29
First release
2012-05-24
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
21
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 50%
- Documented parameters
- 100%
- Return-value docs
- 80%
- References docs
- 0%
Topics
Depended on by (26)
Bioconductor (25)
CRAN (1)
People
- Guangchuang Yu author maintainer
- Vladislav Petyuk contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("ReactomePA")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.